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4 protocols using alexafluor 546 donkey anti rabbit a10040

1

Confocal Imaging of Fluorescently Labeled Cells

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Microscope images were taken using a Zeiss axiovert 200M confocal microscope equipped with LSM 510 3 channel confocal imaging system, and a Zeiss 63×/1.4 DIC Plan-Apochromat, oil immersion objective lens at 25°C. Cells were stained using AlexaFluor 488 donkey anti-mouse IgG (A21202), AlexaFluor 546 donkey anti-rabbit (A10040), and AlexaFluor 647 donkey anti-goat IgG (A21447) (Invitrogen). Images were acquired using Zeiss LSM 510 ver3.2 software, and processed using Image J to colour split/merge channels.
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2

Confocal Imaging of Fluorescently Labeled Cells

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Microscope images were taken using a Zeiss axiovert 200M confocal microscope equipped with LSM 510 3 channel confocal imaging system, and a Zeiss 63×/1.4 DIC Plan-Apochromat, oil immersion objective lens at 25°C. Cells were stained using AlexaFluor 488 donkey anti-mouse IgG (A21202), AlexaFluor 546 donkey anti-rabbit (A10040), and AlexaFluor 647 donkey anti-goat IgG (A21447) (Invitrogen). Images were acquired using Zeiss LSM 510 ver3.2 software, and processed using Image J to colour split/merge channels.
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3

Spinal Cord Injury Immunohistochemistry

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To evaluate lesion size and spared tissue area, tissue was collected for immunohistochemistry (n = 7 male and female rats) at 7 dpi. Rats received an intraperitoneal pentobarbital overdose and were transcardially perfused with 0.9% saline, then 4% paraformaldehyde. Spinal cords were suspended in paraformaldehyde overnight, cyroprotected in 30% sucrose, and cryosectioned (16 μm; Gaudet et al., 2015 (link)). For immunohistochemistry, slides were incubated with 10% normal donkey serum (1 h), then with primary antibodies (overnight; mouse anti-glial fibrillary acidic protein (GFAP; 1:100; catalog #0869110, MP-Biomedicals) and rabbit anti-Iba1 (1:1000; catalog #019-19741, Wako Chemicals), then with secondary antibodies (2 h; Alexa Fluor-488 donkey anti-mouse (A-21202) and Alexa Fluor-546 donkey anti-rabbit (A-10040); both 1:500; Thermo Fisher Scientific) and DAPI (nuclear stain; catalog #D1306, Thermo Fisher Scientific). Images were captured on an Olympus IX81 Microscope and analyzed using Fiji (Schindelin et al., 2012 (link)).
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4

Immunofluorescence Analysis of CRC Cells

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Primary CRC cells were seeded and grown in 12-well cultivation chambers with removable microscopy glass slides (ibidi, Martinsried, Germany); cancer spheroids obtained by the hanging drop assay were also sedi-mented in the same chamber. Immunofluorescence analyses were performed as previously described by Di Maio et al (31 (link)). Briefly, following fixation in 4% paraformaldehyde in PBS for 10 min, the cells were permeabilized in 0.1% Triton X-100 in PBS for 30-120 min, and then blocked in 10% bovine serum albumin for 30 min. The cells were incubated with primary antibodies (Table I) overnight, and then with secondary antibodies (Alexa Fluor 546 donkey anti-rabbit, A10040; Alexa Fluor 488 donkey anti-mouse, A21202; Thermo Fisher Scientific) for 1 h, and then with DAPI (Sigma-Aldrich) for 30 min at room temperature to label the nuclei. Negative controls without primary antibodies were also included, and these exhibited no staining. Following the indicated treatments, coverslips were mounted on glass slides and examined under a fluorescence confocal microscope (Zeiss LSM 700, Carl Zeiss, Oberkochen, Germany).
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