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4 protocols using levofloxacin

1

Antimicrobial Susceptibility Testing of Bacterial Isolates

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In-vitro antimicrobial susceptibility testing of the bacterial isolates was performed by the Kirby-Bauer disc diffusion method (15 (link)). The following antimicrobial agents were used with their respective concentrations, obtained from Liofilchem Company, Italy: Amoxicillin (25 μg), Amoxicillin-clavulanate (30 μg), cefoxitin (30 μg), cefixime (5 μg), cefepime (30 μg), cefriaxone (30 μg), ceftazidime (30 μg), imipenem (10 μg), gentamicin (10 μg), amikacin (30 μg), tetracycline, trimethoprim-sulfamethoxazole (25 μg), nalidixic acid (30 μg), ciprofloxacin (5 μg), levofloxacin (5 μg), nitrofurantoin (30 μg), tetracycline (30 μg), and chloramphenicol (30 μg). CLSI standard was used to compare the results (16 ).
Non-susceptibility to at least one antimicrobial agent in three or more antimicrobial categories was defined as multi-drug resistance (MDR) isolates, while non-susceptibility to at least one agent in all but two or fewer antimicrobial categories was defined as pan-drug resistance (PDR) isolates (17 (link)).
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2

Screening Carbapenem Resistance Genes

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Eleven carbapenem resistance genes (blaIMP, blaVIM, blaNDM, blaSPM, blaAIM, blaDIM, blaGIM, blaSIM, blaKPC, blaBIC, and blaOXA–48) (Poirel et al., 2011 (link)) were screened using PCR detection from the presumptive carbapenemase-producing bacteria. The amplicons were sequenced (Macrogen) and identified using NCBI BLAST1. For the screened carbapenemase-producing bacteria, MDR to 16 antibiotics was determined using Kirby-Bauer disk diffusion, and resistance to colistin was determined using broth dilution methods. For MDR, the following antibiotic disks were used: ampicillin-sulbactam (10/10 μg), cefotaxime (30 μg), ceftazidime (30 μg), chloramphenicol (30 μg) ciprofloxacin (5 μg), colistin (2 mg/L), doripenem (10 μg), fosfomycin (200 μg), gentamicin (10 μg), levofloxacin (5 μg), meropenem (10 μg), netilmicin (10 μg), piperacillin (100 μg), tetracycline (30 μg), tobramycin (10 μg), and trimethoprim-sulfamethoxazole (1.25/23.75 μg) (Liofilchem, Roseto degli Abruzzi, Italy). Resistance to the antibiotics was determined according to the Clinical and Laboratory Standards Institute (CLSI) guideline (Clinical Laboratory Standars and Institue, 2016 ). Subsequently, MICs of 16 antibiotics for E. coli strain N7 were evaluated using the broth dilution method (Hasselmann, 2003 (link)).
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Standardized Antimicrobial Susceptibility Testing

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Antimicrobial susceptibility testing for clinical isolates was determined by the Kirby–Bauer disc diffusion method on Mueller–Hinton agar plates at 37°C for 20–24 hours, according to the guidelines of the Clinical and Laboratory Standards Institute (CLSI 2022). The McFarland 0.5 standard was used to standardize the inoculum density for susceptibility tests [23 ]. The antibiotic discs used in the current study included TMP-SMX (1.25/23.75 μg), levofloxacin (5 μg), and minocycline (30 μg) (Liofilchem, Italy). E. coli ATCC 25922 was used as the control to check the accuracy of the susceptibility testing.
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Antibiotic Susceptibility Profiling

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Determination of the MICs were measured for antibiotics including ampicillin, penicillin G, tetracycline, minocycline, ciprofloxacin, levofloxacin, gatifloxacin, vancomycin, nitrofurantoin and linezolid by E-test method (Liofilchem, Italy).
The MIC was found from the scale in terms of mg/mL and where the border of the growth inhibition ellipse crosses with the strip after 24-h incubation period on Mueller-Hinton agar (Merck, Germany) in 37 8C. MICs of isolates were interpreted according to Clinical and Laboratory Standards Institute guidelines (CLSI) [29] . MICs of ciprofloxacin (CIP) were measured with and without carbonylcyanide 3-chlorophenylhydrazone (CCCP) by broth microdilution.
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