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15 protocols using sirolimus

1

Sirolimus Modulates Footpad Inflammation

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Mice were injected I.P. with sirolimus or vehicle 5 mg/kg every other day. A stock solution of sirolimus (LC Laboratories) was dissolved in 100% ethanol to a concentration of 50 mg/mL. For injection, sirolimus was suspended to a concentration of 0.5 mg/mL in a vehicle consisting of 5% Tween 80 (Sigma) and 5% PEG 400 (Sigma). Footpad thickness was measured weekly using calipers.
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2

Pediatric Liver Microsome CYP3A7 Assay

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Sirolimus and zotarolimus were purchased from LC Laboratories (Woburn, MA) and from Molcan Corporation (Toronto, Canada), respectively. Ketoconazole and montelukast were obtained from Sigma-Aldrich (St. Louis, MO). Potassium phosphate buffer (500 mM, pH 7.4), NADPH regenerating system, CYP3A7 with both reductase and cytochrome b5, and Sf9 insect cell control were obtained from BD Bioscience (Woburn, MA). Individual pediatric liver microsomes were obtained from Xenotech (Lenexa, KS) and were provided with information on the age, gender, ethnicity, microsomal concentration, and metabolic activity of each P450 marker reaction. Other reagents used in this study were commercially available and of analytical grade.
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3

Preparation of KRP-203 and Sirolimus Solutions

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KRP-203 (Kyorin Pharmaceuticals Co., Ltd., Tokyo, Japan) was dissolved in sterile 0.5% methylcellulose (MC; Wako Pure Chemical Industries, Osaka, Japan) at 0.3 mg/mL by repeated vortex-mixing and sonication, and was further diluted to 0.1 mg/mL for some experiments. The solution was preserved for 1 wk at 4 °C. MC of 0.5% was used as a control vehicle.
Sirolimus (LC Laboratories, MA) was dissolved in 70% ethanol to a concentration of 2 mg/mL. Aliquots were prepared and stored at −20 °C. On the day of injection, aliquots were diluted to 0.3 mg/mL using sterile distilled water.
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4

Sirolimus-Loaded Liposomal Formulation

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Sirolimus was purchased from LC Laboratories (Boston, MA, USA) and soy bean phosphatidylcholine (S100PC) from Avanti Polar Lipids (Alabaster, AL, USA). The liposomes were prepared using the thin lipid film hydration method followed by extrusion, as described previously [33 (link)–35 (link)]. The mixture of Sirolimus (20 mg) and phosphatidylcholine (120 mg) was dissolved in chloroform and dried with nitrogen gas to form a thin lipid film on a round bottom glass tube. The tube was maintained under vacuum for 12 h to ensure complete removal of chloroform. The resulting film was hydrated with 4 mL of TES buffer containing 6% trehalose (pH 7.0) for self-assembly of the lipids into multilamellar liposomes. The liposome dispersion was then passed through 0.1 and 0.2 μm pore size polycarbonate membranes in an extruder (Northern Lipids, Inc., Burnaby, Canada) under nitrogen pressure, and was freeze–dried and stored at 4 °C.
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5

Dual IGF1R/IR and mTOR Inhibitors Protocol

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The dual IGF1R/IR inhibitor linsitinib and the mTOR inhibitors sirolimus and everolimus were purchased from LC Laboratories (Inc. Woburn, MA, USA) and prepared as a 103M stock solution in dimethylsulfoxide (DMSO). Compounds were stored at −20 °C and further diluted in 40% DMSO before the use. Final DMSO concentration, also added as vehicle to controls, was 0.4%.
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6

Kinase Inhibitors Modulate DNA Damage Response

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Kinase inhibitors of ATM (KU-60019, AZD1390, and AZD0156) and ATR (VE-821) were obtained from Selleck Chemicals (Houston, TX, USA). Sirolimus was obtained from LC Laboratories (Woburn, MA, USA). The concentrations and timepoints of the pharmacological inhibitors used in all experiments were based on previous studies [26 (link),27 (link),28 (link),29 (link),30 (link),31 (link),32 (link),33 (link),34 (link)].
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7

Nephrotoxic Serum-Induced Kidney Injury

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Sheep anti-rat nephrotoxic serum was prepared by immunizing sheep with a particulate fraction of GBM from normal rat kidney.25 (link) On day 0, rats received a single tail-vein injection of sheep anti-rat GBM serum (1 mL/kg; n=8) under isofluorane anesthesia. On day 1, animals with NSN were divided into groups according to body weight and received either daily (between 7–8 am) subcutaneous injections of sirolimus (0.25 mg/kg, LC Laboratories, Woburn, MA, USA) or an equal volume of vehicle (20% dimethylsulfoxide, 20% ethanol, 60% saline v/v). A separate group of animals received a single injection of saline instead of nephrotoxic serum and were designated control animals (n=4). sirolimus (0.25 mg/mL in vehicle) was prepared under sterile conditions from stock solution on a daily basis prior to injection. The dose of sirolimus was chosen according to previous studies from our laboratory.26 (link),27 (link) On day 14, all animals were anesthetized with excess ketamine and xylazine (90:10 mg/kg by intraperitoneal injection), blood was collected, and nephrectomies were performed via a midline laparotomy.
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8

Sirolimus and Rosuvastatin Dissolution

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Sirolimus (#R-5000) and rosuvastatin calcium (#RHR1928) obtained from LC Laboratories (Woburn, MA, USA) and Sigma-Aldrich (St. Louis, MO, USA), respectively, were dissolved in dimethyl sulfoxide (#D0457; Samchun Chemical, Seoul, Korea). Heparin sodium was obtained from Hanlim (Seoul, Korea). Zoletil® 50 was obtained from VIRBAC (Carros, France), and aspirin was obtained from Bayer Korea (Seoul, Korea). Rhodamine B and agarose were obtained from Sigma-Aldrich.
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9

Protocols for Culturing and Analyzing Pancreatic Islets

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Human islets with >90% purity and viability were obtained from non-diabetic de-identified cadaveric donors through the Integrated Islet Distribution Program (IIDP). The characteristics of the donors are reported in Supplementary Table 1. Upon receipt, the islets were cultured as described70 (link). Murine islets of Langerhans were isolated as previously described31 (link). Procedures on rodents have been performed according to guidelines and regulations approved by the Einstein Animal Care and Use Committee. INS-1 cells were maintained in monolayer culture in RPMI-1640 medium, as previously described by our group71 (link). Insulin levels were determined as described and validated31 (link),71 (link)–73 (link). In some experiments the cells were treated with glucose (5.5 and 16.7 mM, Bio-Techne, Abingdon, UK), sirolimus (LC Laboratories, Woburn, MA, dissolved in dymethylsulfoxide), or L-leucine (10 mM, MyBioSource, San Diego, CA, USA) and glutamine (2 mM, MyBioSource). Cell viability was estimated by the [3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide, MTT colorimetric assay, spectophotometrically (570 nm) measuring the ability of metabolically active cells to reduce MTT.
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10

Isolation and Culture of Aortic Cells

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Human and porcine aortic SMCs (HAoSMCs and PAoSMCs) were isolated from
aortas as previously described [33 (link)], and
were cultured in DMEM with 10% FBS (Hyclone, Marlborough, MA, USA) at 37°
C and 5% CO2 until sub-confluence. Human aortic ECs (HAoECs) were
purchased from Promocell (Heidelberg, Germany). All EC types were cultured in
EGM-2 (Lonza, Basel, Switzerland). Cells at passage 3–6 were used in all
experiments in this study. Recombinant human Fas ligand was purchased from
BioLegend (San Diego, CA, USA). The NO donor DetaNONOate
((Z)-1-[N-(2-aminoethyl)-N-(2-ammonioethyl)amino]diazen-1-ium-1,2-diolate) was
purchased from Cayman Chemical (Ann Arbor, MI, USA). Sirolimus and everolimus
was purchased from LC Laboratories (Boston, MA, USA). Ethylene-vinyl acetate
copolymer (EVAc), dichloromethane (DCM) and Ficoll 400 were purchased from Sigma
(St. Louis, MO, USA).
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