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4 protocols using af5128

1

Investigating Protein Expression in Lacrimal Fluid

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Clinical LF specimens (non-LFH group:LFH group = 2:2) were snap-frozen in liquid nitrogen and stored at −80°C for Western blotting. Total protein from each LF specimen was extracted in RIPA lysis buffer (Santa Cruz) and quantified using the BCA assay (Pierce). After denaturation, proteins specimens were separated using gel electrophoresis on 8%–12% SDS-PAGE, and then were transferred onto PVDF membranes (Roche Applied Science, Indianapolis, IN, USA). Using 5% nonfat dry milk for 2 hours at room temperature, The membranes were blocked in 5% nonfat dry milk for 2 h and then incubated overnight at 4°C with the following primary antibodies: Beclin1 (1:500; AF5128, Affinity), P62 (1:500; AF5384, Affinity), FN1 (1:500; AF5335, Affinity), TGFβ1 (1:500; AF1027, Affinity), NGF (1:500; AF5172, Affinity), HMOX1 (1:500; AF5393, Affinity), CAT (1:500; DF7545, Affinity), SIRT1 (1:500; TU365233, Abmart), and GAPDH (1:5000; AP0063, Bioworld). After, the membranes were incubated with goat anti-rabbit IgG (H+L) HRP secondary antibody (1:5000; RM3002, Rayantibody) for 2 h at room temperature. The proteins bands were detected using an enhanced chemiluminescence kit (KF005, Affinity), and chemiluminescence signals were quantified with Image Lab statistical software (Bio-Rad, Hercules, CA, USA).
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2

Western Blot Analysis of Cell Markers

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Preprocessed samples were added to the RIPA lysate solution (P0013B; Beyotime, China), and the supernatants were collected after centrifugation. Samples were loaded onto sodium dodecyl sulfate-polyacrylamide gels (3250GR500; neoFROXX, Einhausen, Germany). Proteins were transferred to polyvinylidene difluoride membranes (WGPVDF22; Servicebio, China) after electrophoresis in transfer buffer for 5 min. The membranes were then incubated with primary antibodies (1:5000 dilution) targeting CD31 (AF6191, Affinity, USA), Vimentin (BF8006, Affinity), α-SMA (AF1032, Affinity), slug (350,136, ZENBIO, China), snail (AF6032, Affinity), twist (AF4009, Affinity), LC3II (3868S, CST, USA), p62 (AF5384, Affinity), beclin 1 (AF5128, Affinity), AMPK (AF6423, Affinity), p-AMPK (AF3423, Affinity), mTOR (AF6308, Affinity), and p-mTOR (AF3308, Affinity). Horseradish peroxidase-conjugated secondary antibodies at a 1:10,000 dilution were added after washing. The membranes were then viewed with an automatic darkroom exposure instrument (JS-M6P; P&Q, China) and varying luminous intensities were used for optimal exposure.
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3

Western Blot Analysis of Apoptosis and Autophagy Markers

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Total protein of the left ventricular tissue of rats and H9c2 cells with LBAG treatment was extracted using lysis buffer containing PMSF on ice. The protein levels were estimated with a BCA method (Thermo Fisher Scientific). Equivalent protein (20 μg) was separated by 10% SDS-PAGE and transferred to PVDF membranes (Millipore, USA). After being blocked, the membranes were then incubated with primary antibodies including Bax (1 : 2000, AF0120, Affinity), Bcl-2 (1 : 1000, AF6139, Affinity), cleaved-caspase 3 (1 : 1000, AF7022, Affinity), p62 (1 : 2000, AF5384, Affinity), LC3 (1 : 1000, AF5402, Affinity), Beclin 1 (1 : 1000, AF5128, Affinity), PI3K (1 : 1000, AF6241, Affinity), phospho-PI3K (1 : 1000, AF3241, Affinity), AKT (1 : 1000, AF6264, Affinity), phospho-pan-AKT1/2/3 (Ser473) (1 : 1000, AF0016, Affinity), mTOR (1 : 2000, AF6308, Affinity), phospho-mTOR (Ser2448) (1 : 1000, AF3308, Affinity), and β-actin (1 : 5000, AF7018, Affinity) overnight at 4°C. Subsequently, the membranes were incubated with secondary antibodies (1 : 5000, Kangchen, China) for 1.5 h at room temperature. Protein bands were visualized using an enhanced chemiluminescent (ECL) kit (Beyotime, China). The image intensity was analyzed using the Image J software.
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4

Protein Expression Analysis in Rat Tissues

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Rats were dissected on ice, and tissue was homogenized in lysis buffer containing 50 mM Tris, pH 7.5, 150 mM NaCl, 1% SDS P40, 5 mM EDTA, and protease inhibitors (Complete Mini; Roche). Cellular debris was removed by centrifugation at 14,000 rpm for 20 min at 4°C, and the supernatant was collected for analysis. Sodium dodecylsulphate polyacrylamide gel electrophoresis (SDS-PAGE) was performed using a 5% stacking gel and a 10% separation gel to separate 20 L of protein in running buffer. The stacking gel was run at 80 V for 0.5 h, and the separation gel was run at 100 V for 1.5 h. The separated proteins were then electrotransferred onto a nitrocellulose filter membrane in transfer buffer at 180 mA for 1.5 h. Protein blots were blocked with 5% defatted milk for 30 min and probed with specific antibodies against TNF-α (Abcam, ab62609), IL-1ꞵ (Affinity, AF5103), Beclin-1 (Affinity, AF5128), and cleaved-caspase3 (Affinity, AF7022). Anti-α-tubulin antibody (Sigma, T6557) was used as a loading control. After three washes with TBST, secondary antibody (CWS) was added at room temperature for 1 h using 5% milk in TBST followed by three additional washes with TBST. Bands were visualized using the Immobilon Western ECL system and were analyzed with the software Gel Pro Analysis (24).
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