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70 protocols using ionomycin

1

Measuring Sperm Calcium Dynamics

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Changes in [Ca2+]i were measured in swim-up sperm (in HTF+) loaded with the Ca2+ indicator Fluo-4-AM (Thermo Fisher Scientific) in 384 multi-well plates in a fluorescence plate reader (Fluostar Omega, BMG Labtech) at 30°C as described previously (47 (link), 54 (link), 67 (link)). Briefly, sperm were loaded with Fluo-4-AM (5 μM, 20 minutes) at 37°C in the presence of Pluronic F-127 (Sigma-Aldrich; 0.05% w/v). After incubation, excess dye was removed by centrifugation (700g, 5 minutes, room temperature). Sperm were resuspended in HTF at a density of 5 × 106 cells/mL, and wells were filled with 54 μL of the suspension; Fluo-4 was excited at 480 nm, and emission was recorded at 520 nm. Changes in fluorescence were converted to changes in ΔF/F0 (%), indicating the percentage change in fluorescence (ΔF) with respect to the mean basal fluorescence (F0) before application of buffer or stimuli. ΔF/F0 (%) changes evoked by progesterone, PGE1 (Cayman Chemical), or NH4Cl (Carl Roth) were normalized to the maximal increase in ΔF/F0 (%) evoked by ionomycin (Cayman Chemical).
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2

HIV Latency Reactivation in Cell Lines

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HEK293T and CEM T cells were maintained in DMEM and RPMI 1640, respectively, supplemented with 10% heat-inactivated fetal bovine serum (FBS), 100 U/ml penicillin/streptomycin and 2 mM L-glutamine (Invitrogen, San Diego, CA, United States). Peripheral blood mononuclear cells (PBMCs) were isolated from healthy donors by Ficoll-Paque gradient centrifugation (Amersham Biosciences) and treated with 10 ng/ml PHA-P (Phytohemagglutinin-P, Sigma Aldrich, St. Louis, MO, United States) for 48 h. The activated PBMCs (PHA-blasts) were cultured in RPMI 1640 with 10% FBS, antibiotics and 20 U/mL of human recombinant IL-2 (R&D systems).
For latent rfl-HIV reactivation, PMA (phorbol 12-myristate 13-acetate, Sigma Aldrich) plus Ionomycin (Cayman Chemical, Ann Arbor, MI, United States), or SAHA (Vorinostat, Sigma Aldrich) were used at 20 ng/ml, 1 and 5 μM, respectively.
Cellular DNA and RNA were extracted by the NucleoSpin RNA kit with RNA/DNA buffer set (Machery-Nagel, Düren, Germany) according to the manufacturer’s protocol.
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3

Ionomycin-Stimulated Proximity Labeling

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We washed Jurkat cells thrice in warm PBS and aliquoted 5e6 cells in 2 mL of PBS containing 1.8 mM CaCl2 into a 15 mL conical tube. We then added ionomycin (Cayman Chemical) to a final concentration of 1 μM and continued incubation at 37 °C for either 1, 5, 10, or 30 minutes, or left the cells untreated as controls. After the stimulation endpoint, we added 0.5 mL of ice-cold solution containing 0.005 AU s−1 μL−1, 5 mM APEX2, and 5 mM BxxT (all 10×) in PBS, and after a few seconds of gentle mixing, 2.5 mL of ice-cold 1 mM H2O2 in PBS to initiate the labeling. For each labeling reaction, we also performed mock labeling where the BxxT was omitted. After 90 s of labeling on ice with gentle swirling, we quenched the labeling reaction by adding 5 mL of ice-cold 20 mM Na-azide, and 20 mM Na-ascorbate in PBS. We then washed the cells twice in the ice-cold quenching buffer and once in PBS with centrifugation (500g, 3 min, 4 °C) and snap-froze the well-drained cell pellets. We stored the cell pellets at −80 °C until lysis.
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4

Intracellular Calcium Increase and Protein Cross-Linking

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To increase intracellular [Ca2+], cells were incubated in 140 mM NaCl, 5 mM KCl, 25 mM HEPES pH 7.4, 10 mM glucose, 1–5 mM CaCl2, and 3 μM ionomycin (Cayman Chemicals) for 5 min at 37°C.
Cross-linking of proteins in HEK293 cells was carried out in 2 ml PBS (GE Lifesciences) with 0.3 mM DSS (Thermo) for 20 min at room temperature. After the reaction was quenched with 50 mM Tris for 15 min, the cells were lysed in 150 mM NaCl, 20 mM HEPES, 0.5% Triton X-100, and EDTA-free protease inhibitors (Roche). Lysates were cleared by centrifugation and subsequently analyzed by Western blotting.
For cross-linking of his6PICK1, 100 nM purified protein was diluted in 150 mM NaCl, 20 mM HEPES pH 7.4, 5 mM HEDTA, and CaCl2 at a concentration calculated using the MaxChelator online tool to give required [Ca2+]free. [Ca2+]total were 0.75 mM, 1.5 mM, 2.5 mM, and 3.4 mM to give [Ca2+]free of 2, 5, 12, and 26 μM, respectively. 10 μM DSS was added for 20 min at room temperature before the reaction was quenched with 50 mM Tris for 15 min. The samples were subsequently analyzed by Western blotting.
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5

Measurement of Neutrophil Oxidative Burst

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The production of ROS was determined to use chemiluminescence (CL) and analyzed by a microplate reader (synergy H1 multi-mode reader, BioTek, USA) [15 (link)]. Neutrophils (3 × 106) were suspended in 1 mL KRG solution. In white 96-well plates (Costar), prepare the mixture of KRG 138 µL, luminol (Sigma) 20 µL, and 2µL SOD (50 U/ml) (S8410); add 20 µL of cell suspensions; put it on the microplate reader; preheat at 37 ℃ for 5 min; add 20 µL of stimulant ionomycin (Cayman); and detect endogenous ROS. The exogenous ROS was detected with 130 µL KRG, 20 µL isoluminol (A8264), 10 µL HRP(4U/ml) (Calbiochem), 20 µL cells, and finally 20 µL stimulants PMA. Use prism software to make a line chart and analyze the data. CL values are expressed as relative fluorescence intensity units.
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6

Mechanistic Insights into AgNP Signaling

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AgNPs with a diameter of 20 nm were procured from NanoComposix (San Diego, CA). For most studies, we used a concentration of 25 μg/ml based on our previous findings and others [12 (link), 21 (link)]. AgNPs are suspended in citrate at a concentration of 1 mg/ml. Anti p-Tyr, p-Ser/Thr, p/t-plcγ1, p/t-PI3K were purchased from Cell Signaling (Beverly, MA), antibodies against SR-BI/II were purchased from LS BioSciences (Seattle, WA) and Thermoscientific (Waltham, MA). CyTM5 Annexin V (BD Pharmingen) was purchased from BD Biosciences (San Jose, CA) and propidium iodide was purchased from Invitrogen (San Diego, CA). Inhibitors and reagents used in our studies include SR-B1 inhibitor 2-(2-butoxyethyl)-1-cyclopentanone thosemic-arbazone (Blt2) (Chembridge Corp., San Diego, CA, USA), Synta (compound 66) (Aobious INC, Gloucester, MA), N,N-Dimethylsphingosine (DMS), Wortmannin, U-73122, Ionomycin (Cayman Chem, Ann Arbor, MI), Ro 31–8220 (Abcam, Cambridge, MA). Concentrations of inhibitors were based on previous literature [22 (link)–26 (link)].
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7

Cytotoxic T Cell Activation and Tumor Assay

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T lymphocytes from healthy donors were isolated by Ficoll method (GE Healthcare, Little Chalfont, UK) followed by positive selection using magnetic beads coated with anti-CD8 antibody (Miltenyi Biotec, Bergisch Gladbach, Germany). Cytotoxic CD8+ T lymphocytes were stimulated with 500 ng/mL ionomycin (Cayman, Ann Arbor, MI, USA; #1932) and 20 ng/mL phorbol 12-myristate-13-acetate (PMA, Adipogen, San Diego, CA, USA; #AG-CN2-0010) for 24 h. Secretions of mouse and human IFN-γ (interferon gamma) were measured by the respective ELISA kits according to the protocols from the manufacturer (eBioscience, San Diego, CA, USA; #88-7314-88 and #88-7316-88).
B16-OVA tumor cells were exposed to cisplatin or oxaliplatin (TargetMol, Boston, MA, USA) for 24 h and then co-cultured with immune cells (B3Z and bone marrow-derived dendritic cells) as previously described [28] (link). Platins were not removed from the culture media in order to expose immune cells to the drugs. Interleukin-2 (IL-2) levels in the culture supernatants were measured by ELISA (eBioscience, San Diego, CA, USA; #88-7024-88).
Mouse CXCL10 (C-X-C Motif Chemokine Ligand 10) protein levels in culture medium were quantified by ELISA according to the protocol provided by the manufacturer (R&D systems, #DY466-05).
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8

Cytotoxicity and Cytokine Profiling of NK Cells

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A total of 106 PBMC or remixed PBMC fraction (containing 1×105 recombined dye-labeled NK cells prepared as described under cell tracing method) was co-cultured with K562 or U937 target cells (obtained from ATCC) in 500 μl cell culture medium for 6 hours at 37°C using an optimized effector:target ratio of 5:1. For CD107a expression, the CD107a mAb was added to the cells at the beginning of the culture. In order to block degradation of reinternalized CD107a and cytokine secretion, respectively, 2 μ molar monensin and 10 μg/ml of brefeldin A (GolgiStop and GolgiPlug, BD Biosciences) were added to the culture 1 h after start of the co-culture. In certain cases 50 ng/ml phorbol 12-myristate 13-acetate (PMA, Merck, Darmstadt, Germany) and 1 μg/ml ionomycin (Cayman Chemical Co., Ann Harbor, MI) were added in addition to achieve a full activation. After incubation for additional 5 h, cells were then first stained on the surface with anti-CD56 and -CD3 antibodies. Then fixation and permeabilization of the cells were performed using Cytofix/Cytoperm solution (BD Biosciences). To assess cytokine production, the fixed and permeabilized cells were further stained with antibodies for IFN-γ, TNF-α, IL-10 and IL13 (Suppl. Table 2). Then flow cytometry was performed. As controls, PBMC were cultured without target cells to display their spontaneous CD107a expression and cytokine production.
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9

Borneol and Menthol Analgesic Effects

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Medical Borneol was obtained from Shanghai Hongqiao Traditional Chinese Medicine Co., Ltd. (+)‐Borneol (simply called Borneol in this study), (±)‐menthol (simply called menthol in this study), complete Freund's adjuvant, and capsaicin were purchased from Sigma‐Aldrich. Formalin was purchased from Xilong Chemical Co. AMTB, naloxone, and LY341495 were obtained from TOCRIS. Bicuculline was obtained from Tokyo Chemical Industry. Muscimol was obtained from Enzo Life Sciences. ATP disodium salt was obtained from Sangon Biotech. Ionomycin was purchased from Cayman Chemical. Morphine hydrochloride was obtained from Northeast Pharm.
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10

Intracellular Staining of T Cells

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For intracellular staining, T cells were restimulated with 5 ng/ml PMA (Cayman Chemical) and 200 ng/ml ionomycin (Cayman Chemical) for 4 h in the presence of GolgiPlug (BD Pharmingen). Subsequently, surface staining was performed at 4°C for 30 min. Cells were fixed and permeabilized using Cytofix/Cytoperm plus Fixation/Permeabilization Kit (BD Pharmingen). For analysis of intranuclear markers, cells were fixed and stained using the FoxP3 intranuclear staining kit (eBioscience), again incubating cells at 4°C for 30 min both during fixation and intranuclear staining. Antibodies are summarized in Table 1. Analysis was performed using a Gallios Flow Cytometer (Beckman Coulter) and results were analyzed with FlowJo software (Tree Star).
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