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32 protocols using ab76252

1

Osteosarcoma Cell Lines and Antibody Specifications

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The human osteosarcoma cell lines MG63, MNNG-HOS and Saos-2 were purchased from the Cell Bank of the Chinese Academy of Sciences (Shanghai, China). The human osteosarcoma cell line U-2OS was purchased from the American Type Culture Collection (ATCC, Manassas, VA, USA). These cell lines were cultured following the ATCC protocols. Standardized culture conditions had been described previously [18 (link)].
The antibodies used were S1PR3 (ab126622; Abcam, Cambridge, UK), YAP (ab52771; Abcam, Cambridge, UK), p-YAP (ab76252; Abcam, Cambridge, UK), c-Myc (ab32072; Abcam), Ki67 (GB13030; Servicebio, Wuhan, China), β-actin (M1210-2; Hua'an Biology, Chuzhou, China), GAPDH (bsm-33033M; Bioss, Beijing, China), anti-rabbit IgG light chain (ab99697, Abcam), anti-rabbit IgG heavy chain (ab99702, Abcam), and anti-mouse IgG light chain (A25012, Abbkine, CA, USA).
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2

Western Blot Analysis of Signaling Proteins

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The total protein was extracted from tissues and cells, and the protein concentration was measured using a BCA kit (Thermo Fisher Scientific, USA). A total of 30 μg of total protein was subjected to polyacrylamide gel electrophoresis and transferred onto a PVDF membrane (Amersham, USA). The membrane was blocked with 5% skim milk powder at room temperature for 1 h and incubated at 4 °C overnight with rabbit antibodies against TLR4 (2 ug/mL, ab13556, Abcam, UK), IRF3 (1 ug/mL, ab68481, Abcam, UK), phosphorylation of IRF3 (1 mg/mL, ab76493, Abcam, UK), YAP (10 mg/mL, ab76252, Abcam, UK), CDX2 (10 mg/mL, ab76541, Abcam, UK), E-cadherin (10 mg/mL, ab40772, Abcam, UK), N-cadherin (1 mg/mL, ab18203, Abcam, UK), Bax (1: 1000, ab32503, Abcam, UK) and Bcl-2 (1: 1000, ab32124, Abcam, UK). The membrane was washed 3 times with PBST (PBS buffer containing 0.1% Tween-20), 10 min each times. Subsequently, horseradish peroxidase-labeled secondary goat anti-rabbit IgG (10 mg/mL, ab6721, Abcam, UK) was added to the membrane for incubation at room temperature for 1 h. The membrane was washed 3 times with PBST buffer for 10 min each. After scanning and development with an optical luminometer (GE Healthcare, USA), the protein band intensities were performed using Image Pro Plus 6.0 software (Media Cybernetics, USA), followed by analysis of the relative protein expression.
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3

Protein Expression Analysis in Osteogenic Cells

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Cell cultures were lysed with Cell lysis buffer (Cell Lysis Buffer (10X) #9803 Cell Signalling Technology) containing 10 mM phenylmethylsulphonyl fluoride (PMSF 93,482 Sigma) as a protease inhibitor. Lysates were incubated on ice for 15 min and centrifugated at 13 000 × g for 20 min at 4°C. Equal micrograms (20 µg) of proteins quantified with bicinchoninic acid (BCA) assay (Thermo Scientific) and boiled in SDS sample buffer (2x Laemmli Sample Buffer BIORAD cat.#161-0737) were resolved on 10% SDS-PAGE and transferred to PVDF membranes (Immun-Blot® PVDF Membrane for protein Blotting BIORAD cat.#162-0177). Blots were blocked for 1 h in PBS-T (PBS plus 0.05% Tween-20), 5% non-fat, dried milk and probed overnight at 4°C with DEPTOR/DEPDC6 antibody, NBP1-49,674 (Novusbio); GAPDH (D16 H11) XP #5174 (Cell Signalling Technology); Anti-YAP (phosphor S127) antibody [EP1675Y] ab76252 (Abcam); anti-YAP antibody [EP1674Y] ab52771 (Abcam); Anti-Sp7/Osterix antibody ab94744 (abcam); anti-BMP2 antibody ab14933 (abcam); RUNX2 (D1L7 F) Rabbit mAb #12,556 (Cell Signalling Technology); Anti-Osteopontin antibody ab8448 (abcam). Immunocomplexes were detected with horseradish peroxidase-conjugated species-specific secondary antibodies (Santa Cruz Biotechnology) followed by enhanced chemiluminescence reaction with Immobilon Western Chemiluminescence HRP substrate WBKLS0100 (Millipore).
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4

Immunohistochemical Analysis of STK4 and p-YAP1 Expression

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The paraffin-embedded sections were dewaxed, dehydrated, and washed under tap water for 2 min. After reaction with 3% methanol-H2O2 for 20 min, the sections were rinsed with distilled water for 2 min and treated with 0.1 M PBS for 3 min, followed by antigen retrieval. Thereafter, the sections were blocked utilizing normal goat serum (C-0005, Shanghai Haoran Biotechnology Co., Ltd., Shanghai, China) and allowed to maintain at ambient temperature for 20 min. After that, the sections were probed with primary antibodies against STK4 (1 : 150, ab51134, Abcam) and p-YAP1 (ab76252, 1 : 200, Abcam) overnight at 4°C, and then re-probed with biotin-labeled goat anti-rabbit IgG (ab97051, dilution ratio of 1 : 2000, Abcam) at room temperature for 40 min. Subsequently, the samples were stained with 3,3′-diaminobenzidine (DA1010, Solarbio, Beijing, China) for 10 min, followed by 1 min counter-staining by hematoxylin (H8070, Solarbio), dehydration by gradient alcohol, clearing with xylene and mounting with neutral gum. The primary antibody was substituted with PBS as NC. Finally, the sections were observed under an optical microscope (CX41-12C02, Olympus) in 5 randomly selected high-power visual fields. The positive cells were those presenting with brown yellow granules, and the percentage of positive cell was calculated by 2 people blinded to the study.
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5

Western Blot Analysis of Endothelial Signaling

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Total cell lysates were prepared from HUVECs exposed to various experimental conditions. Equal amount of total proteins (8 μg) were loaded and separated on 4–12% NuPAGE gradient gel (Life Technologies), transferred to PVDF membrane and detect with Enhanced Chemiluminescence substrate (Pierce) as per the manufacturer’s instructions. Primary antibodies for YAP (14,074, Cell Signaling), YAP-PhosphoSer127 (ab76252, Abcam), VCAM1 (ab134047, Abcam), eNOS (610,297, BD Biosciences), Rabbit anti-CYR61 (144,795, Cell Signaling) and ARHGAP18 clone 2A3-F3 (in-house), were used at 1:500–1000 and Actin-HRP (Abcam) was used at 1:10,000 dilution in PBS/Tween20 containing 1% BSA.
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6

Western Blot Analysis of Hippo Pathway

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HGC-27 and MKN-28 cells were harvested and extracted using lysis buffer (100 mM Tris-HCl, 2% SDS, 1 mM Mercaptoethanol, 25% Glycerol). Cell extracts were boiled in loading buffer and equal amount of cell extracts were separated on 15% SDS-PAGE gels. Separated protein bands were transferred into polyvinylidene fluoride (PVDF) membranes. The primary antibodies-anti-LATS1 (ab70561, Rabbit polyclonal antibody, Abcam, Cambridge, MA, USA), anti-YAP (ab52771, Rabbit monoclonal antibody, Abcam, Cambridge, MA, USA), anti-p-YAP (S127) (ab76252, Rabbit monoclonal antibody, Abcam, Cambridge, MA, USA) and anti-GAPDH (ab153802, Rabbit polyclonal antibody, Abcam, Cambridge, MA, USA) were diluted at a ratio of 1:1000 according to the instructions and incubated overnight at 4 °C. Horseradish peroxidase-linked secondary antibodies were added at a dilution ratio of 1:10,000, and incubated at room temperature for 1 h. The membranes were washed with PBS for three times and the immunoreactive bands were visualized using ECL-PLUS/Kit (GE Healthcare, Piscataway, NJ, USA) according to the kit’s instruction.
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7

Immunohistochemical analysis of SCLC

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A total of 37 formalin-fixed, paraffin-embedded tissues were obtained from patients diagnosed with SCLC by bronchofiberscopy or biopsy between January 2012 and March 2015. All patients received care and follow-up in our hospital. Informed consent was obtained under the protocol approved by our hospital's ethics committee. The clinical characteristics are summarized in Table 1.
The endogenous peroxidase activity was blocked by soaking the deparaffinized specimens in 3.3% H2O2. The specimens were then incubated with primary antibodies (MST2, 1 : 200, ab87322, abcam; pMST2 (phosphor Thr180), 1 : 200, PA5-104616, Invitrogen; YAP1, 1 : 100, ab205270, abcam; pYAP1 (phosphor S127), 1 : 100,ab76252, abcam; CD133, 1 : 100, ab216323, Abcam) and the corresponding secondary antibodies [20 (link)]. Semiquantitative results were obtained by using the German semiquantitative scoring method, as previously described [21 (link)].
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8

TGR5 Signaling Pathway Regulation

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Antibodies plasmids and chemicals used in the study were listed: GAPDH (sc-47724, Santa cruz biotechnology, for western blotting), YAP1 (ab205270, abcam, for western blotting; sc-376830, Santa cruz biotechnology, for Immunofluorescence (IF) and Immunohistochemistry), p-YAP(Ser127) (ab76252, abcam, for western blotting), CYR61 (26689-1-AP, proteintch, for western blotting), c-Myc (ab32072, abcam, for western blotting), CyclinD1 (ab16663, abcam, for western blotting), LaminB1 (PB9611, Boster, for western blotting), RhoA (#2117, CST, for western blotting), ROCK1 (ab134181, abcam, for western blotting), PKA C-ɑ(#4782, CST, for western blotting), TGR5 (ab72608, abcam, for western blotting, for IF and Immunohistochemistry), and Ki67 (#9449, CST, for Immunohistochemistry). Ursodeoxycholic acid was obtained from Target Mol (Shanghai, China), while INT-777 was obtained from Medchemexpress. TGR5 receptor antogonist SBI-115, H89, and SQ22536 were purchased from Selleck, while KT5720 was purchased from Sigma.
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9

Phospho-STAT3 T622 Antibody Production

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Rabbit polyclonal antibody recognizing phosphorylated STAT3 T622 was customized from Boer Biotechnology. To prepare antibody recognizing STAT3 pT622, rabbits were treated with peptide containing STAT3 pT622. Nonmodified peptide immobilized on an affinity column was used to remove the antibodies recognizing nonphosphorylated STAT3, and STAT3 pT622 peptide immobilized on an affinity column was used to associate with and isolate the antibodies. The eluted antibodies were then concentrated.
Antibodies recognizing TAZ (#83669), STAT3 (#9139), MST2 (#3952), MST1 (#14946), YAP1 (#12395), SAV1 (#13301), and STAT3‐pY705 (#9145) were obtained from Cell Signaling Technology. Antibody simultaneously recognizing LATS1 and LATS2 (BS‐4081R) was obtained from Bioss. Antibodies recognizing LATS1/2 pT1079/T1041 (ab111344), Ki67 (ab16667), YAP1 (ab205270), HA (ab9110), tubulin (ab7291), Flag (ab205606), GST (ab36415), YAP1 pS127 (ab76252), phospho‐Thr (ab9337), JAK2 (ab108596), and recombinant IL‐6 protein (ab9627) were purchased from Abcam. Anti‐Flag agarose beads were obtained from Sigma. XMU‐MP‐1 was obtained from MedChemExpress. [γ‐32P]‐ATP was obtained from MP Biomedicals.
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10

Molecular Tools for Studying Cell Signaling

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Metafectene Pro transfection reagent was obtained from Biontex. siRNAs targeting 14-3-3σ (sc-29590), YAP1 (sc-38637) were purchased from Santa Cruz Biotechnology. Antibodies against GFP (ab290), YAP1 (ab52771), pYAP1 (ab76252) were from Abcam. Antibodies against 14-3-3σ (05-632), RRM1 (MABE567) and ChIP Assay kit (17-295) were purchased from EMD Millipore. Antibody against RRM2 was generated in-house [31 (link)]. Lipofectamine, pcDNA3.1(+) plasmid, and G418 were from Invitrogen. RNeasy Mini kit and Qiagen Blood and Cell Culture DNA Kit were from Qiagen. The iScript™ cDNA synthesis kit and the SYBR Green PCR master mix were from Bio-Rad and Applied Biosystems, respectively. Gemcitabine were purchased from Besse Medical
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