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11 protocols using sicon

1

p53 and CHOP Silencing in HCT116 Cells

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HCT116 cells were transfected with p53 and CHOP-specific silencing RNA (sip53 and siCHOP) as well as control siRNA (siCON) (Santa Cruz Biotechnology) for 48 h. For each transfection, 20 nM siRNA duplex with the transfection reagent G-Fectin (Genolution Pharmaceuticals, Inc., Seoul, Korea) was added in 450 μL of growth medium and the entire mixture was added gently to the cells.
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2

Dual silencing of SAG and PHLPP1/DEPTOR

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The lenti-virus-based siRNA knockdown of SAG (Lt-SAG, 5’-GAGGACUGUGUUGU GGUCU-3’), along with scrambled siRNA control (Lt-Con, 5’-AUUGUAUGCGAUC GCAGAC-3’) was performed as described [7 (link)]. For double silencing, cells were infected with Lt-Sag or Lt-Con for 48 to 72 hrs in 60-mm dishes. Cells were then split into 60-mm dishes and transiently transfected with si-Con or Si-PHLPP1 (siRNA pools from Santa Cruz Biotechnology, Santa Cruz, CA) or Si-DEPTOR (5’-GCCATGACAATCGGAAATCTA-3’) using Lipofectamine 2000 (Life Technology, Carlsbad, CA). Forty-eight hours later, cells were harvested for proliferation, clonogenic, migration and soft agar assay.
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3

Transfection of ZEB1 siRNA in ARO and TT cells

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ARO and TT cells in the logarithmic growth phase were transfected with non-targeting negative control small interfering RNA (siRNA, si-con; Santa Cruz Biotechnology) and human ZEB1 specific siRNA (si-ZEB1; Santa Cruz Biotechnology) using Lipofectamine 2000 (Thermo Fisher Scientific) according to the manufacturer’s instructions. Cells were verified and used for analysis at 48 hours after transfection.
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4

Silencing EDA2R in human podocytes

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siRNA specific for EDA2R (siEDA2R, Santa Cruz Biotechnology, Dallas, TX) was used to silence EDA2R expression in the cultured human podocyte. Sixty pmol siEDA2R or the same amount of control siRNA (siCon, Santa Cruz Biotechnology) was mixed with 18 μl Lipofectamine RNAiMAX Reagent (Invitrogen, Thermo Fisher Scientific, Waltham, US), and then the mixture was added to the differentiated podocytes (2 × 105 in 60 mm dish), following the manufacturer’s instruction. For 96-well plates (1×104 cells per well), 10 pmol siEDA2R/siCon and 1.5 μl Lipofectamine RNAiMAX Reagent were used.
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5

Src-targeting siRNA Transfection Assay

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Predesigned Src-targeting siRNA (siSrc) and control siRNA (siCon) were purchased from Santa Cruz. The cells were transfected with 100 nM siRNA while using Lipofectamine RNAiMAX (Invitrogen, Waltham, MA, USA) for 5 h, cultured in medium containing 0.5% FBS, and harvested ~48 h after transfection.
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6

Silencing Human Apelin in LX-2 Cells

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Small interfering RNA (siRNA)-targeting human apelin (si-apelin) and nonspecific siRNA (si-Con) were purchased from Santa Cruz Biotechnology. Transfection was performed using a Lipofectamine reagent (Invitrogen) according to the manufacturer’s instructions. At 24 h posttransfection, LX-2 cells were harvested and used for qRT-PCR and Western blot assays.
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7

Silencing AQP1 Gene Expression

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Human AQP1-targeting siRNA (siAQP1, Cat# sc-29711) and control siRNA (siCon, Cat# sc-37007) were purchased from Santa Cruz Biotechnology. Cells were transfected with siRNAs in Opti-MEM (GIBCO, Grand Island, NY, USA) using Lipofectamine 2000 (Invitrogen) for 5 hours according to the manufacturer's recommendations and incubated in a CO2 incubator for 24 hours at 37℃.
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8

Culturing and Transfecting ESCC Cell Lines

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ESCC cell lines including Eca109, Kyse70, Kyse450 cells as well as normal esophageal epithelial cell Het-1A were maintained in RPMI-1640 medium supplemented with 10% fetal bovine serum (FBS), 100 U/ml penicillin (Sigma-Aldrich, USA), and 100 μg/ml streptomycin (Sigma-Aldrich, USA) at 37 °C in an incubator with 5% CO2. Control siRNA (si-Con) (Santa Cruz company, USA), Ctr1 siRNA (si-Ctr1) (Santa Cruz company, USA), pcDNA3.1 and pcDNA3.1-Ctr1 were transfected to Eca109, Kyse70 and Kyse450 cells by Lipofectamine™ 2000 (Invitrogen Life Technologies, Carslbad, CA, USA) according to manufacturer's instruction.
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9

Silencing MCAM in 143B Cells

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The human OS cell line 143B was purchased from ZhongQiaoXinZhou Biotechnology (NO.ZQ0455). The cells were routinely cultured in complete culture medium (ZhongQiaoXinZhou, NO.ZQ‐303) at 37°C in a 5% CO2 atmosphere.
Transfection was performed at a cell density of 60% in a six‐well plate with small interfering (si) RNA targeting MCAM (si‐MCAM) or non‐specific control siRNA (si‐con; Santa Cruz Biotechnology; NO.sc‐35918 and sc‐37007, respectively) using Lipofectamine 2000 transfection reagent (Invitrogen; Thermo Fisher Scientific; NO.11668027) for 48 h, following the manufacturer's protocol. Thereafter, the effect of siRNA transfection was examined using western blot analysis, and the cells were used for subsequent experiments.
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10

Regulation of LIN28B and AURKA

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MiR‐26a‐5p mimics, miR‐29a‐3p mimics, and negative control oligonucleotides (miR‐CON) were purchased from Sigma (#HMI0415, #HMC0434, #HMC0002, respectively). Small interfering pool RNA of LIN28B, RAN, and control RNA (siLIN28B, siRAN, siCon; five siRNAs per pool) were purchased from Santa Cruz Biotechnology (#SC‐105614, #SC‐36382, #SC‐37007, respectively). LIN28B and AURKA plasmids were purchased from Addgene (#51375 and #20427, respectively). Luciferase reporter gene plasmids, including wild‐type AURKA 3′‐UTR, wild‐type LIN28B 3′‐UTR, and their seed mutants, were synthesized and subcloned into pmirGLO vectors, which were confirmed by sequencing.
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