The largest database of trusted experimental protocols

6 protocols using r phycoerythrin

1

Bacterial Immune Evasion Mechanisms

Check if the same lab product or an alternative is used in the 5 most similar protocols
Experiments were performed based on methods described previously (133 (link)). Briefly, mid log phase bacteria grown in the presence or absence of Sia were washed in HBSS containing Ca/Mg and then treated with 10% NHS for 5 min at 37°C and 200 rpm. For IgG and IgM deposition, NHS was heat inactivated by incubation at 56°C for 30 min and 200 rpm shaking. Heat-inactivated NHS-treated bacteria were incubated with R-phycoerythrin- or FITC-conjugated antibodies against human IgG and IgM (both Sigma-Aldrich), respectively. For complement component, C3c was probed with FITC-conjugated anti-human C3c (Bio-Rad). For factor H 6/7 binding, the bacteria were incubated with the purified FH6/7 (mouse IgG) supernatant (134 (link)) for 30 min and visualized using allophycocyanin (APC)-conjugated anti-mouse IgG. Siglec-9−Fc binding was determined by incubating the bacteria with 300 ng of purified protein for 2 h at 37°C. The visualization was done using Alexa Fluor 488-conjugated secondary antibody against human Fc. All the data were collected using BD FACSCalibur flow cytometer, and the data were analyzed using FlowJo software.
+ Open protocol
+ Expand
2

Cell Culture and Toxicity Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
Penicillin-streptomycin solution, trypsin-EDTA solution, Dulbecco’s modified Eagle’s medium, RPMI 1640 medium, and 1% antibiotic-antimycotic solution were obtained from Life Technologies/Gibco (Grand Island, NY, USA). AgNO3, fetal bovine serum, and the in vitro toxicology assay kit were purchased from Sigma-Aldrich (St. Louis, MO, USA). Graphite (Gt) powder, NaOH, KMnO4, NaNO3, anhydrous ethanol, 98% H2SO4, 36% HCl, 30% H2O2 aqueous solution, silver nitrate, R-phycoerythrin, and all other chemicals were purchased from Sigma-Aldrich unless otherwise stated.
+ Open protocol
+ Expand
3

Protein Preparation for Mass Spectrometry

Check if the same lab product or an alternative is used in the 5 most similar protocols
Phycocyanin (Cat. number 52468), R‐phycoerythrin (Cat. number 52412), and APC (Cat. number A7472) were purchased from Sigma. Proteins were dissolved in PBS to a final concentration of approximately 0.2 mg/mL, corresponding to about 2 μM. For MS analysis, proteins were buffer‐exchanged into 1 M ammonium acetate, pH 7.5, using Biospin 6 microcentrifuge columns (BioRad, CA).
+ Open protocol
+ Expand
4

Fluorescent Dye Limit of Detection

Check if the same lab product or an alternative is used in the 5 most similar protocols
Fluorescein (sodium salt, SRL 55091) and R-phycoerythrin (52412 Sigma Aldrich) were used for making dilutions to determine the lower limit of detection for the setup. 3-bromobenzotrifluoride (Sigma B59004) was mixed with dSURF oil for the refractive index modifications as per the procedure requirements.
Dragon Green intensity standard kit (DG06M) was purchased from Bangs Laboratories, Inc. Rainbow calibration particles (RCP-60-5-2, RCP-60-5-5) were obtained from Spherotech. FITC and PE stained beads were obtained from the three-color BD CaliBRITE Kit (BD Biosciences 340486). Beckman Coulter CytoFLEX Daily QC Fluorospheres (B53230), Spherotech SPHERO Rainbow Calibration Particles, Peak 2 (RCP-60-50-2) and polystyrene DVB-COOH microspheres from Bangs Laboratories, Inc. (PC07001) were used as reference standards for 3, 6, and 10 µm sized beads, respectively.
+ Open protocol
+ Expand
5

Microfluidic Fluorescence Protein Fractionation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Albumin–fluorescein isothiocyanate conjugate (FITC‐BSA), R‐Phycoerythrin (R‐PE), ethylenediamine (≥99.5 %), and 1‐Methylpiperazine (≥99.5 %) were purchased from Sigma‐Aldrich (Sigma‐Aldrich Chemie BV, Zwijndrecht, The Netherlands). 0.5 g/L of FITC‐BSA solution, 0.5 g/L of R‐PE solution, 1:100 diluted Source 15Q (∅ 15 μm particles based on rigid polystyrene/divinyl benzene polymer matrix, GE Healthcare Life Sciences, GE Healthcare Europe GmbH, Eindhoven, The Netherlands) suspension were prepare in 50 mM ethylenediamine buffer (pH 7.0). The FITC‐BSA solution and R‐PE solution were mixed in a 1:1 volume ratio before the experiment. 1‐Methylpiperazine buffer solutions (pH 5.0 and pH 4.0) were prepared for the generation of pH gradient of elution buffer solutions in the microfluidic device. After fractionation of proteins, fluorescence images of the 16 reactors were acquired by a Leica I3 filter cube (excitation: BP 450–490 nm; emission: LP 515 nm) to obtain FITC‐BSA fluorescence intensity and a Leica N 2.1 filter cube (excitation: BP 515–560 nm; emission: LP 590 nm) to monitor R‐PE fluorescence intensity.
+ Open protocol
+ Expand
6

Quantification of Complement Activation in PNH

Check if the same lab product or an alternative is used in the 5 most similar protocols
Erythrocytes from PNH patients were harvested by centrifugation, washed with PBS several times until the supernatant remained clear and stored for up to a week in ACD-A buffer at 4ºC. C3 deposition on erythrocytes and percentage of PNH-E were determined simultaneously by 2-color flow cytometry. Briefly, a 0.4% suspension of erythrocytes was incubated with a rabbit polyclonal anti human C3 antibody (in house) that recognizes all C3, C3b, iC3b and C3dg at 1μg/mL in PBS for 30 min at room temperature (RT). Then we incubated the erythrocytes with an anti-rabbit IgG antibody labeled with Alexa 488 (Lifetechnologies) 1μg/mL and with a mouse monoclonal anti-CD59 labeled with R-Phycoerythrin (Sigma-Aldrich) used in 1:50 dilution for 30min at RT to identify PNH-E. FLAER detection of the GPI anchor in granulocytes was performed as described previously. (Ahluwalia, et al., 2014) Free eculizumab levels Absorbance was measured at 492nm. Sequential dilutions of a known concentration of pure eculizumab were used as the calibration curve.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!