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7 protocols using paraformaldehyde solution

1

Fluorescent Labeling of Exosomes

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Exosomes were labeled with the green fluorescent dye PKH-67 using the PKH67 Green Fluorescent Cell Linker kit for General Cell Membrane Labeling (Sigma-Aldrich; Merck KGaA) as previously described (28 (link)). Briefly, 6 µg 0 and 5 Gy-Exo were labeled with 2 µM PKH-67 for 5 min at 25°C. Then, free PKH-67 was removed by centrifugation 14,000 × g for 2 min at 25°C using the VIVACON 500 ultracentrifugation device (100,000 MWCO; Sartorius Stedim Biotech; Sartorius AG). MIAPaCa-2 cells were cultured for 24 h at 37°C, after which the culture media was replaced with that containing the labeled exosomes. Following incubation at 37°C overnight, cells were gently washed twice with PBS and fixed by 4% paraformaldehyde solution (Nacalai Tesque) for 20 min at 25°C. After washing with Hanks' Balanced Salt Solution (Gibco; Thermo Fisher Scientific, Inc.), cells were incubated with 10 µg/ml WGA, Alexa Fluor 594 conjugate (Invitrogen, Thermo Fisher Scientific, Inc.) for 10 min at 25°C. Finally, samples were incubated with Hoechst 33342 (1:2,000; Invitrogen; Thermo Fisher Scientific, Inc.) for 5 min at 37°C.
Images were captured using a confocal microscope (LSM700; Carl Zeiss AG) equipped with an oil immersion objective lens (magnification, ×40). Images were analyzed with ZEN 2012 (Carl Zeiss AG) and processed using ImageJ software ver.1.51 (National Institutes of Health) (29 ).
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2

Corneal Epithelial Cell Immunostaining

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For the immunostaining, we used Lab-Tek Chamber slide with Permanox Slide for the cell culture of corneal epithelial cells (Thermo Scientific Nunc, Waltham, MA USA). The cells were washed with 1× PBS and fixed with 4% paraformaldehyde solution (Nacalai Tesque). The cells were permeabilized with Triton X-100 solution, and blocking reaction was carried out with 1% bovine serum albumin in PBS. Primary antibody (anti-Cytokeratin 3/2p, Santa Cruz, sc-80,000) was exposed at 1:40 dilution with blocking buffer. The secondary antibody Alexa 568-labeled goat anti-mouse IgG was used for the detection with the counterstaining by DAPI. The staining images were obtained by a fluorescence microscope (BZ-9000, Keyence, Tokyo, Japan).
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3

In Situ Hybridization of Vasopressin and Oxytocin Receptors in Mouse Epididymis

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Adult male WT and V1a-deficient mice were euthanized and fixed by transcardial perfusion using 4% paraformaldehyde solution (Nacalai Tesque). Epididymides were collected and incubated for 16 h in 4% paraformaldehyde at RT. The next day, they were embedded in paraffin blocks and sliced into 5-μm sections. RNA in situ hybridization was performed using an RNAscope 2.5 HD Detection Kit according to the manufacturer’s protocol (Advanced Cell Diagnostics). The sections were hybridized with probes against Avpr1a (no. 418061) or Oxtr (no. 402651-C2) mRNA or with a negative control probe (no. 310043). The tissues were counterstained with Mayer’s hematoxylin and eosin Y solution and observed under a light microscope (AX80). The manufacturer presented the signal color for Avpr1a as green in the double-staining experiment, but we describe it as blue in this report. All experiments were repeated on tissues from three different male mice, with the same results.
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4

Fluorescent Labeling of Cancer Cells

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The human cervical cancer cell line HeLa and human gastric cancer cell line N87 or human breast cancer cells expressing firefly luciferase SK-BR-3/Luc were obtained from the RIKEN Bio-Resource Center (Tsukuba, Japan) or JCRB Cell Bank (Osaka, Japan), respectively, and maintained at 37 °C in 5% FBS-DMEM (Nacalai Tesque, Kyoto, Japan) supplemented with penicillin (100 U/ml) and streptomycin (100 µg/ml) (Nacalai Tesque). The cells (1.0 × 104 cells/well) were seeded on a slide chamber plate, cultured for 16 h and fixed by treatment with a 4% paraformaldehyde solution (Nacalai Tesque) for 10 min at 25 °C. The cells were blocked with 1% BSA/PBS for 1 h at 25 °C. After the addition of 50 nM purified His-tagged FLAPs or 5 nM trastuzumab in 1% BSA/PBS to the chamber, the cells were incubated for 16 h at 4 °C. Thousand-fold diluted Alexa Fluor 488-conjugated mouse anti-His tag secondary antibody (Medical & Biological Laboratories, Aichi, Japan) or Alexa Fluor 488-conjugated mouse anti-human IgG Fc secondary antibody in 1% BSA/PBS were used to fluorescently label the His-tagged FLAPs or trastuzumab, respectively. After washing three times with PBS, the stained cells were mounted with Fluoromount (Diagnostic ByoSystems, CA, USA) containing 1/1000 Hoechst 33342 (Nacalai Tesque). All photos were taken using a BZ-X700 microscope (Keyence, Osaka, Japan).
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5

Adipocyte Size Measurement Protocol

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Tissue samples were fixed in 4% paraformaldehyde solution (Nacalai Tesque, Japan). The paraffin-embedded sections were stained with hematoxylin and eosin. Adipocyte sizes were measured for two animals per group using a microscope (BZ-9000, Keyence BZ-X Analyzer). Average adipocyte size was calculated as described before [21 (link)].
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6

Fluorescent Microscopy Analysis of Yeast Transformants

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After transformation and culture on SDC+HLM agar plates, yeast colonies were picked and suspended in 100 μL of 4% (w/v) paraformaldehyde solution (Nacalai), fixed at 4ºC, and visualized using fluorescent microscopy (BZ-9000; Keyence, Osaka, Japan) equipped with a CFI Plan Apochromat Lamda x100 oil lens (NA = 1.45; Nikon Co., Tokyo, Japan) and a GFP-B filter (Excitation filter 470/40, Barrier filter 535/50, Dichroic mirror 500 nm; Nikon Co.). Images were obtained and analyzed using BZ-II Viewer Version 2.1.0 (Keyence) and BZ-II Analyzer Version 2.2 software. The foci-forming ratio of each transformant was calculated as described below with a total of 72–417 cells counted for each sample. Transformation of yeast cells was repeated three times for each plasmid on different dates to ensure reproducibility.
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7

Adipocyte Size Quantification via Microscopy

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Tissue samples were fixed in 4% paraformaldehyde solution (Nacalai Tesque). The paraffin-embedded sections were stained with hematoxylin and eosin. Adipocyte sizes were measured in four randomly chosen microscopic areas from three animals per group using a microscope (BZ-9000, Keyence BZ-X Analyzer). Average adipocyte size was calculated by dividing the chosen microscopic area by the total adipocyte number in the area.
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