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7 protocols using ptrchis

1

Genetic Manipulation of Salmonella Efflux Pumps

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The acrA, acrB and acrE mutants were constructed previously from Salmonella enterica serovar Typhimurium strain SL1344 [9 (link), 18 , 47 (link), 63 (link)]. Other mutants were constructed using the λ red recombinase system described previously, antibiotic markers were removed and the process repeated to make double, triple, quadruple and quintuple mutants [64 (link)]. The PAP genes were amplified by PCR from SL1344 and cloned into pET21b (Novagen), relying upon leaky expression to provide low level complementation of mutant strains. Vectors overexpressing acrA or acrE, were constructed previously and vectors overexpressing mdtA and mdsA were generated according to manufacturer's instructions (Invitrogen pTrcHis). Strains were grown in Luria–Bertani (LB) broth at 37°C with shaking unless otherwise stated.
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2

Recombinant L1S Protein Expression

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L1S protein was expressed in an E. coli construct with a pTrcHis (Invitrogen) and purified. Briefly, log phase bacteria were incubated for 8 hours with IPTG (Life Technologies) to induce protein expression. Following cell lysis and DNAse treatment, lysates were centrifuged to pellet cellular debris. Supernatants were filtered through a 0.22 μm syringe filter (Fisher Scientific) and loaded onto an ATKA FPLC for nickel (Ni) column (GE Healthcare) for affinity purification of the His-tagged protein. Fractions from the eluted column were evaluated using SDS-PAGE and Coomassie staining. Fractions containing the L1S protein were concentrated using Millipore 10k KD columns (Millipore) and protein concentrations were determined using a BCA assay (Thermo Scientific).
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3

Prokaryotic Protein Expression Protocol

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Escherichia coli (E. coli) TOP 10, the prokaryotic expression vector pTrcHis and the fluorescent dye SYPRO orange (5000× stock concentration) were obtained from Invitrogen (Carlsbad, CA, USA). The cofactor BH4, l-Phe, catalase, Hepes, dithiothreitol (DTT), low molecular weight (MW) CS (MW: 61 kDa; viscosity: 42 cps) with a deacetylation degree (DD) of 91.8%, TPP and cibacron brilliant red 3B-A were from Sigma Chemical Co (St. Louis, MO, USA). Glycerol (molecular biology grade) was purchased from Merck KGaA (Darmstadt, Germany). All reagents were of analytical grade or equivalent.
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4

Recombinant Antigen Expression and Purification

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Recombinant TS was expressed in bacteria and purified as described elsewhere [3 (link)]. CLCP [47 (link)], KMP-11 [41 (link), 42 (link)] and Tol-T [40 (link)] encoding genes were cloned by PCR performed on genomic T. cruzi DNA and cloned into pTrcHis (Invitrogen) to be expressed in Escherichia coli BL21. Proteins were purified by immobilized metal affinity chromatography through Ni2+-charged Hi-Trap chelating columns (GE-Healthcare) to immunize BALB/cJ mice. The central and variable region (nucleotides 109 to 390) of one TcMUCII gene (GenBank U32448.1) was cloned by PCR into pGEX-1λT vector (GE Healthcare). GST-TcMUCII protein was expressed and purified by affinity chromatography and used for immunization. The protocol of animal immunization followed in this study was approved by the Committee on the Ethics of Animal Experiments of the Universidad Nacional de San Martín (UNSAM), according with the recommendations of the Guide for the Care and Use of Laboratory Animals of the National Institutes of Health.
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5

Purification and Characterization of Recombinant Enzymes

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Escherichia coli TOP 10, the prokaryotic expression vector pTrcHis and the fluorescent dye SYPRO orange (5000× stock concentration) were obtained from Invitrogen (Carlsbad, CA, USA). The cofactor tetrahydrobiopterin (BH4), catalase, l-Phenylalanine (l-Phe), Hepes, dithiothreitol (DTT), low MM CS (61 kDa; viscosity: 42 cps) with a DD of 91.8%, TPP, cibacron brilliant red 3B-A and CM-β-CD with a DS of 3 were from Sigma Chemical Co (St. Louis, MO, USA). Hydrolysed HA ranging MM of 20–50 (PrimaHyal 50; HA-50), 100–300 (PrimaHyal 300; HA-300) and 800–1000 kDa (PrimaHyal 1000; HA-1000) were from Soliance (Pomacle, France). The β-CD (Cavamax W7) and γ-CD (Cavamax W8) were from Wacker Chemie AG (Munich, Germany). The HP-β-CD with DS of 0.65 (HP-β-CD 0.65; Kleptose HPB) and 0.99 (HP-β-CD 0.99; Kleptose HP) were from Roquette Corporate (Lestrem, France). Glycerol (molecular biology grade) was purchased from Merck KGaA (Darmstadt, Germany). All reagents were of analytical grade or equivalent.
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6

Cloning and Expression of Human IL-1α Variants

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Full-length human IL-1α open reading frame was amplified by reverse transcriptase-polymerase chain reaction (RT-PCR) using the total RNA of HeLa cells. The fragment was cloned to the bacterial expression vector pTrc/His (Invitrogen, Waltham, MA, USA) with T/A cloning by adding the A residue during incubation with Taq polymerase (Takara, Shiga, Japan) and designated the pTrc-pIL-1α vector (Fig. 2a). This vector was used as a template to generate ppIL-1α and mIL-1α, which were then cloned to the same vector and designated pTrc-ppIL-1α (Fig. 2b) and pTrc-mIL-1α (Fig. 2c), respectively. The constructs were transformed to Escherichia coli (E. coli.) strain BL21 (Agilent, Santa Clara, CA, USA) and used for protein synthesis. In transfection experiments, ppIL-1α was cloned to green fluorescence protein (GFP)-containing mammalian expression vector pEGFP-C3 (Takara Bio USA, Mountain View, CA, USA) by an infusion method (In-Fusion HD Cloning Kit, Takara). The EcoRI site was added to the primers (pEGFP-ppIL-1α vector; Fig. 2d). The pEGFP-C3 vector was used as a control vector (Fig. 2e). pIL-1α, ppIL-1α, and mIL-1α were amplified by PCR and cloned to the EcoRI site of the pcDNA3.1 (Takara) expression vector (Fig. 2f,g,h,respectively). The sequences of all inserts were confirmed, and all plasmids were transformed to E. coli strain DH5α.
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7

Affinity Purification of Recombinant L1S Protein

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L1S protein was expressed in E. coli with a pTrcHis (Invitrogen) construct and purified as previously described (23 (link)). Briefly, log phase bacteria were incubated 8 h with IPTG to induce protein expression. Following cell lysis and DNAse treatment, lysates with centrifuges to pellet cellular debris. Supernatants were filtered in a 0.22 μm syringe filter and loaded onto and ATKA FPLC for nickel (Ni) column affinity purification of the 6 x His tagged protein. Aliquots of fractions eluted from the column were evaluated using SDS-PAGE and Coomassie staining. In some experiments, polymixin B columns were used to further purify L1S protein. Fractions containing L1S protein were concentrated using Millipore 10k KD columns and protein concentrations were determined using BCA.
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