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Lsm900

Manufactured by Leica
Sourced in Germany

The LSM900 is a high-performance confocal laser scanning microscope designed for advanced imaging applications. It features a modular architecture, allowing for flexible configuration to suit various research and imaging needs. The LSM900 provides exceptional optical performance, enabling detailed analysis of samples at the cellular and sub-cellular level.

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8 protocols using lsm900

1

Cellular Uptake and Acidification Dynamics

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THP‐1 cells (2 × 105 cells) were seeded in a 20‐mm glass bottom dish (NEST, Wuxi, China) and differentiated into macrophages. They were incubated with pHrodo red‐ and fluorescein‐labeled 10000 MW dextran (10 µg mL−1) (Thermo Fisher Scientific, Waltham, MA, USA) for 1 h before OM (500 µg mL−1) or chloroquine (30 µM) treatment for 3.5 h. Cells were then washed 3 times with PBS and imaged on a confocal microscope (LSM900, Leica, Wetzlar, Hessen, Germany). The fluorescence intensity of pHrodo red (ex: 565 nm; em: 585 nm) and fluorescein (ex: 488 nm; em: 525 nm) in the cells was quantified by Image J software (NIH, Bethesda, MD, USA). For each condition, at least 30 cells from 3 independent experiments were quantified to obtain the intensity ratio of fluorescein to pHrodo red.
To examine the cellular uptake of Nano‐OM, THP‐1 cell‐derived macrophages were treated with DiD (Solarbio, Beijing, China)‐labeled liposomes for localizing Nano‐OM in the cells, and stained with 25 µM DiO (Beyotime, Shanghai, China) for 20 min for labeling the cell membranes and DAPI (Beyotime, Shanghai, China) for 5 min for labeling the nucleus; the fluorescence images were acquired on a confocal microscope (LSM900, Leica, Wetzlar, Hessen, Germany).
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2

Cellular Uptake and Acidification Assessment

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THP‐1 cells (2.4 × 105 cells) were seeded in a 20 mm glass bottom dish (NEST, Wuxi, China) and differentiated into macrophages as previously described. To examine the cellular uptake of M‐P12, macrophages were treated with DiD‐labelled M‐P12 (0.2 mg mL−1 phospholipid and 0.77 µg mL−1 DiD) overnight, and stained with DiO for 20 min and DAPI for 5 min to label the cell membrane and nucleus, respectively. The fluorescence images were acquired on a confocal microscope (LSM900, Leica, Wetzlar, Hessen, Germany).
To assess the endosomal acidification, macrophages were incubated with pHrodo red (10 µg mL−1) and fluorescein‐labelled dextran (20 µg mL−1) in the presence of nanomicelles (phospholipid: 0.2 mg mL−1) or chloroquine (CHQ, 30 µm) treatment for 6 h. Cells were then washed 3 times with PBS and imaged on a confocal microscope (LSM900, Leica, Wetzlar, Hessen, Germany). The fluorescence intensities of pHrodo red (ex: 565 nm; em: 585 nm) and fluorescein (ex: 488 nm; em: 525 nm) were quantified by Image J software. For each condition, at least 60 cells from 3 independent experiments were quantified to obtain the intensity ratio of fluorescein to pHrodo red.
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3

Immunocytochemistry of Neural Cultures

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Immunocytochemistry of neural cultures was performed at 14–22 days in vitro (DIV). Neural cultures were fixed with 4% (w/v) PFA and 4% (w/v) sucrose in PBS for 15 min at RT and then permeabilized with 0.2% Triton X-100 in PBS for 10 min at RT. After blocking with PBS containing 0.3% BSA, cells were incubated with primary antibody containing 0.3% BSA for 60 min at RT. Primary antibodies were used at the following dilutions: anti-synapsin1 (1:1,000), anti-EndoI (1:1,000), anti-Bassoon (1:2,000), anti-Complexin 1/2 (1:500) and anti-VGLUT1 (1:1,000 for Shigeo3 and 1:2,000 for Synaptic Systems). After washing with 0.3% BSA in PBS, cells were incubated with secondary antibody containing 0.3% BSA for 60 min at RT. Secondary antibodies conjugated with fluorophore were used at 1:1,000. Finally, after extensive washing, cells were post-fixed with 4% PFA for 15 min at RT and mounted in Prolong Diamond. Specimens were visualized with Carl Zeiss LSM-900 and Leica TCS SP8 confocal fluorescence microscopes with a 63× oil-immersion (NA =1.40) and a 100× oil-immersion (NA = 1.40) objective lens, respectively. Acquired images were analyzed with Fiji and images shown in figures (Figures 7, 8A, 8B, S5, and S6A) were then smoothed with a Gaussian spatial filter (the radius of 1 pixel (200 nm) for Figures 7 and S5; σ = 1.00 for Figures 8A, 8B, and S6A).
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4

Histological Analysis of EYFP Expression

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For histological investigations, some of the brains were sliced with vibratome (LEICA VT1000s) to obtain 40 μm coronal brain sections. For immediate inspection of EYFP-expression, the slices around the injection site were mounted on SuperFrost® slides (Menzel Gläser; ThermoFisher Scientific, Braunschweig, Germany) with Fluoroshield (w/DAPI, #F6057, SigmaAldrich) and cover-slipped (size #0, Menzel Gläser). For validation, some sections underwent immunohistochemical staining procedures. The sections were washed thrice in KPBS and preincubated in KPBS containing 5% goat serum, 1% bovine serum albumin (BSA) and 0.3% Triton X-100 for 30 min. Following, they were incubated with primary antibodies for vGlut2 (polyclonal guinea pig, anti-vGlut2, AB2251-I, 1:1000, Millipore, USA) at 4°C overnight. On the following day, the sections were rinsed in KPBS containing 0.25% BSA and 0.1% Triton X-100 and incubated for 1 h in secondary antibody (Goat, Anti-guinea pig, Alex-568, A-11075, 1:400, ThermoFisher Scientific, USA). Following further rinsing, the sections were mounted with Fluoroshield (with DAPI, #F6057, SigmaAldrich), air-dried and cover slipped (size #0, Menzel Gläser). Fluorescent images were obtained with confocal laser scanning microscope (Leica LSM900).
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5

Medulla Oblongata Neuroanatomy Immunohistochemistry

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At the end of the experiments, the animals were terminally anesthetized with pentobarbitone sodium (200 mg/kg, i.p.) and perfused transcardially with 0.1 m PBS, pH 7.4. The brainstem was removed and fixed for 24 h in 4% paraformaldehyde in PBS at 4°C, followed by cryoprotection in 30% sucrose. Serial transverse sections (30 μm) of the medulla oblongata were cut using a freezing microtome. Immunohistochemistry was performed on free-floating sections by incubation overnight at 4°C with mouse anti-microtubule-associated protein 2 (MAP2; 1:500; Sigma-Aldrich, M1406), rabbit anti-tyrosine hydroxylase (1:100; Sigma-Aldrich, HPA061003) and/or chicken anti-GFP (1:250; Aves Labs, GFP-1020) followed by incubation with secondary antibodies conjugated to the fluorescent probes for 2.5 h at room temperature (each 1:250; Life Science Technologies). Images were obtained with a confocal microscope (Zeiss LSM 900) or epifluorescent microscope (Leica, DMR).
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6

Fluorescence Imaging of Anesthetized Animals

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Larval and adult stage animals were anesthetized with sodium azide (NaN3, 100 mM) and mounted on a 4% agarose pad on imaging slides. Images were recorded with an automated fluorescence microscope (Zeiss, Axio Imager Z2). Z stacks (0.50–1.0 μm step size) were acquired using a Zeiss Axiocam 503 mono (ZEN Blue software, version 2.3.69.1000), a Zeiss LSM 880, or a Zeiss LSM 900, or a Leica SP8 laser scanning confocal microscope (Leica Application Suite [LAS] X confocal software, version 3.5.7.23225). Representative images shown are max intensity z-projections. All image reconstruction was performed in Fiji (version 2.9.0/1.53t). Fluorescent overlays and cropping for figures were generated using Adobe Photoshop 2022 (23.2.2 Release). Images of strains containing the fluorescent Neuronal Polychromatic Atlas of Landmarks (NeuroPAL) transgene94 (link) for cell identification were acquired on a Zeiss LSM880 confocal microscope with 0.5 μm step size.
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7

Multimodal Microscopy Imaging Protocol

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Confocal microscopes Zeiss LSM880 Multiphoton, Zeiss LSM900 and Leica TCS SP8 STED were used with 40x (1.3 NA) and 63x (1.4 NA) oil immersion objectives or 20x (0.8 NA) objective. Confocal microscope Leica SPE3 was used with 40x (1.15 NA) and 63x (1.3 NA) oil immersion objectives. Zeiss LSM880 Multiphoton was also used for multiphoton imaging and linear unmixing was performed after acquisition. Z step size ranged from 0.3-0.5μm. For super-resolution microscopy the Nikon GFP4 iSIM was used with 100x (1.45 NA) oil immersion objective with z-step size 0.1μm.
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8

Seed Morphology and Cellulose Analysis

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Around 30 seeds were hydrated in water for 30 min and stained with 300 µl of 0.01% (w/v) RR (Sigma-Aldrich; R2751) for 15 min at 125 rpm in 24-well plates. After rinsing with water, the stained seeds were re-suspended in 300 µl of water and imaged with a Leica M165FC stereomicroscope equipped with MC170 HD camera. The mucilage and seed projected areas were quantified using an existing ImageJ pipeline (Voiniciuc et al., 2015b) .
Cellulose around hydrated seeds was stained with 0.01% (w/v) Pontamine fast scarlet 4B (S4B, also known as Direct Red 23 [Sigma-Aldrich; 212490]) in 50 mM NaCl for 60 min at 125 rpm in 24-well plates (Anderson et al., 2010; Mendu et al., 2011) . The counterstain was performed by mixing with 25 ug mL -1 Calcofluor (Megazyme C-CLFR) for 5 min. Seeds were imaged with a Carl Zeiss LSM 780 microscope with 10X/0.45 objective and the following excitation / emission wavelengths (S4B: 561 / 580-650 nm; Calcofluor: 405 / 410-452 nm). The lengths of cellulosic rays were measured by ImageJ.
To view surface morphology, around 30 seeds were mixed with 500 µL of 0.01% (w/v) propidium iodide for 15 min. Seeds were rinsed twice with water and imaged using a Leica LSM 900 with 10X/0.3 objective (excitation 488 nm, emission 600-650 nm).
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