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20 protocols using sch772984

1

Cytotoxic Evaluation of Trabectedin

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Trabectedin was gifted by TAIHO Pharmaceutical, Co. LTD (Tsukuba, Japan). Methotrexate (MTX) hydrate and doxorubicin (DOX) were purchased by Sigma‐Aldrich (St. Louis, MO, USA) and Wako Pure Chemical Industries (Osaka, Japan), respectively. The ERK inhibitor, SCH772984, was purchased from Cayman Chemical (Ann Arbor, MI, USA). The drugs were prepared in dimethyl sulfoxide (DMSO) and stored at −20°C. For in vitro examinations, the drugs were diluted in DMEM to the desired concentration. For in vivo experiments, trabectedin was further diluted with phosphate buffer pH 4.0 immediately before administration.
The following primary antibodies were used: anti‐cleaved caspase‐3 and anti‐beta‐actin (Cell Signaling Technology, Inc., Danvers, MA, USA); anti‐microphthalmia‐associated transcription factor (MITF) and anti‐activating transcription factor 1 (ATF1) (Abcam, Cambridge, UK); anti‐PCNA, anti‐tyrosinase (TYR), and anti‐tyrosinase‐related protein 2 (TRP2) (Santa Cruz Biotechnology, Inc., Dallas, TX, USA). Horseradish peroxidase (HRP)‐conjugated secondary antibody was obtained from GE Healthcare Life Sciences (Pittsburg, PA, USA).
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2

Disrupting uPAR-Integrin Interaction

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Inhibition of uPAR-integrin interaction was obtained with the M25 peptide, previously identified in a phage display library, able to uncouple uPAR from integrin α-chain. The peptide was produced in collaboration with the Peptide Facility at Biotechnology Center, University of Padova (CRIBI). In the β-propeller model of α-chain folding, the sequence of this peptide (STYHHLSLGYMYTLN) spans an exposed loop on the ligand-binding surface of α-chain, thus impairing integrin α chain-uPAR interaction. In cell culture M25 water solution was used at 50 μM at 37 °C. MEK1/2 inhibition was achieved with 1 μM CI-1040 (Cayman Chemical) while ERK1/2 inhibition was obtained with 1 μM SCH772984 (Cayman Chemical).
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3

ACRE Model: Evaluating MAPK Inhibitors

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Cells were seeded in 12 mm Transwell® inserts as indicated in the ACRE Model Setup. On day 4 of the ACRE Model Setup, prior to exposure, seeded ACRE inserts were transferred to a temporary multi-well plate. Pre-warmed (37 ˚C) basal exposure medium containing the ERK1/2 and p38 MAPK inhibitors, 800 nM SCH772984 (Cayman Chemical, #19166) and 300 nM LY2228820 (mesylate) (Cayman Chemical, #23259), respectively, was added to the apical and basolateral compartments of the multi-well plate. ACRE inserts were returned to the tissue culture incubator for 2.5 h. Following incubation, basal exposure medium containing MAPK inhibitors was removed, and ACRE inserts were combined with seeded HULEC and exposed as described in ACRE Model Setup. Western blot analysis was performed on H441 cellular protein extracts after 1 h VEH and 1 h ACRE-DEP treatment and qPCR analysis was performed on synthesized HULEC cDNA after 6 h VEH and 6 h ACRE-DEP treatment. This methodology was then repeated with an additional set of ERK1/2 and p38 inhibitors, 1 µM BVD523 and 3 µM SB203580, respectively. Statistical analysis was conducted in GraphPad Prism (version 9.3.1) using an ordinary one-way ANOVA and Šidák’s multiple comparisons post-hoc test.
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4

PRDX3 and MMP1 Expression Analysis

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3 × 105 cells were treated with 500nM or 1µM of SCH772984 (Cayman, Ann Arbor, Michigan) in a 6-well plate for 24 h. Cells were then harvested for RT-qPCR to examine the relative expression of PRDX3 and MMP1.
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5

Evaluating BRAF-Targeted Therapies in Melanoma

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Two BRAF-mutated cell lines, A-375 [73 (link)] and Mel-HO [74 (link)], as well as two BRAF-WT melanoma cell lines, MEWO [75 (link)] and SK-MEL-23 [76 (link)], were cultured at 37 °C, 5% CO2 in DMEM (4.5 g/L glucose; Invitrogen, Karlsruhe, Germany), supplemented with 10% fetal calf serum and antibiotics. For control, three different cultures of normal human fibroblasts were used (ATCC, Manassas, VA, USA), which were cultured in RPMI 1640 growth medium + 10% FCS.
Cells were treated with the selective BRAF (V600E) inhibitor vemurafenib/PLX4032 (Selleck Chemicals, Houston, TX, USA), the ERK1/2 inhibitor SCH772984 (Cay19166; Cayman Chemical, Hamburg, Germany), and the Mcl-1 inhibitor S63845 (HY-100741; MedChemExpress, Cologne, Germany), while control cells received the solvent DMSO. For caspase inhibition, the pan-caspase inhibitor QVD-Oph (Abcam, Cambridge, UK; 5 μM) was applied at 1 h before cells were treated with other agents. Most analyses were performed in 24-well plates, and 5 × 104 cells were seeded per well.
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6

Cell Culture Maintenance and Compound Screening

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All cell lines were maintained in a humidified incubator at 37 °C with 5% CO2. PC9, HCC827, H3122, A549, A375, GR4, WZR12, PC9R, MGH134, MGH006, MGH1109, and MOLM13 were cultured in RPMI 1640 medium with 10% fetal bovine serum (FBS) and 1% penicillin–streptomycin. MIA PaCa-2 and SW1573 were cultured in DMEM/F-12 medium with 10% fetal bovine serum (FBS) and 1% penicillin–streptomycin. MGH119 were cultured in DMEM medium with 10% fetal bovine serum (FBS) and 1% penicillin–streptomycin. 293FT cells were cultured in DMEM high glucose medium with 10% FBS, 1% penicillin–streptomycin, 1% sodium pyruvate, 1% nonessential amino acids and 1% GlutaMax. All cell lines were purchased from American Type Culture Collection or Duke University Cell Culture Facility except for MGH lines, which were obtained from Dr. Aaron Hata. Cell lines were authenticated using the Promega PowerPlex 18D kit. Drugs were purchased from ApexBio (Osimertinib, Gefitinib, SCH772984, Ceritinib, Quizartinib, PLX4720, AMG510, Lorlatinib), Cayman Chemical (Olaparib), and SelleckChem (AZD0156, AZD1390, Q-VD-Oph, Cycloheximide).
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7

Antibody Validation and Wnt Pathway Analysis

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Primary antibodies were obtained from the following sources: β-actin (MAB1501R) and phosphorylated ERK1/2 (M8159) from Millipore Sigma (Oakville, ON, Canada), ERK2 (sc-154) from Santa Cruz Biotechnology (Santa Cruz, CA, USA), non-phospho (active) β-catenin (D13A1), LRP5 (D80F2), LRP6 (C5C7), LRP6 (C47E12) and phospho-LRP6 (Ser1490) from Cell Signaling Technology (Danvers, MA, USA) and β-catenin (C14) and BrdU (B44) from BD Biosciences (San Jose, CA, USA). Horseradish peroxidase antibodies were obtained from GE Healthcare Life Sciences (Mississauga, ON, Canada) and alkaline phosphatase-conjugated antibodies from Promega Corporation (Madison, WI, USA). The specific ERK inhibitor SCH772984 was obtained from Cayman Chemical Company (Ann Arbor, MI, USA). Recombinant mouse Wnt3a was obtained from Abcam (Cambridge, MA, USA). Other materials were purchased from Millipore Sigma unless stated otherwise.
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8

Regulation of CD4 T Cell Differentiation

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Naïve CD4 T Cells, prepared as described above, were seeded in 96 well plates in complete X-VIVO 15 supplemented with or without TGF-β (5 ng/ml) and Dynabeads T-Activator CD3/CD28 (one bead/cell). Before supplementation, cells were incubated for 30 min with ERK1/2 inhibitor (SCH 772984, Cayman) or p-38 inhibitor (SB202190, Cayman) at 2.5 μM and 5 μM. To determine SMAD2/3, STAT1 and STAT3 phosphorylation cells were harvested after 12 h and phosphorylation status determined using flow cytometry. Assessment of FOXP3 and ALOX15 expression conducted after 24 h using flow cytometry.
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9

Molecular Profiling of Androgenic Pathways

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α-SMA (7817), collagen I (34710), TGF-β1 (92486), AR (74272), CYP19 (18995), ERα (32063), ERβ (288), GPER (39742), and Lox (174316) antibodies were purchased from Abcam (Cambridge, UK). Gαi (5290), P-AKT (4060), AKT (4685), P-MDM2 (3521), ERK1/2 (4695), P-ERK1/2 (4370), GAPDH (2118), β-actin (3700), and β-tubulin (2128) antibodies were purchased from Cell Signaling Technology (Boston, MA, USA). SRD5A2 (SAB2105567) and HIF-1α (SAB5200017) antibodies, estradiol, dihydrotestosterone, cycloheximide, and MG132 were purchased from Sigma–Aldrich (Darmstadt, Germany). Anti-mouse/rabbit second antibody for western blot was from Invitrogen. G1, G15, AG1478, SCH772984, and PTX were purchased from Cayman (Ann Arbor, MI, USA).
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10

Pharmacological Modulation of Circadian Rhythms

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VIP (Tocris) and Bay 55-9837 (Tocris) stocks were prepared by dissolving in HEPES-buffered medium. Glutamate (1 mM; Tocris) was dissolved in 1eq. NaOH, Tetrodotoxin (TTX, 1 µM; Sigma) and BDNF (200 ng/ml; R&D Systems) were dissolved in water. BDNF was applied at CT16, while TTX was applied 24 h prior to VIP treatment. Sotrastaurin (300 nM; Cayman Chemical), SP600125 (3 µM; Tocris), SCH772984 (100 nM; Cayman Chemical) and 666-15 (1 µM; Tocris) were all dissolved in DMSO, Rp-8-Br-cAMPS (50 µM; Biolog) in water, while PKI 14-22 amide myristoylated (1 µM; Tocris) was dissolved in 30% acetonitrile; these 6 drugs were used 30 min prior to VIP treatment. All pharmacological agents were bath-applied to SCN slices unless otherwise stated, and washed off only if stated explicitly. Phase of treatments was extrapolated from the preceding rhythm. Due to their arrhythmic nature, Cry1−/−Cry2−/− slices were treated based on Cry1−/−Cry2+/- littermate phases (data not shown).
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