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11 protocols using sh con

1

Adenoviral Delivery of Yap shRNA

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The recombinant adenovirus encoding Yap shRNA (shYap) or control shRNA (shCon) were constructed according to the manufacturer’s instructions (Genechem, Shanghai, China). The adenovirus expressing Yap (Ad-Yap) and control viruses (Ad-Con) were conducted according to the manufacturer’s instructions (Genechem). For transfer in vitro, VSMC was transfected with adenovirus (3 pfu/cell) for 72 hours. For transfer in vivo, adenovirus (1011 pfu/mL) was injected into the injured left common carotid artery via the external carotid artery immediately after injury and then incubated for 30 min. The mice subsequently received intravenous injection of adenovirus via tail vein at 7, 14, 21 days after injury.
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2

Overexpression and Knockdown of PTTG3P in Liver Cancer Cells

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To obtain cell lines stably over-expressing PTTG3P, HepG2 and Hep3B cells were infected with the Lv-PTTG3P and Lv-con viruses (LAND, Guangzhou, China). To observe the knockdown effects of PTTG3P, HepG2 and Hep3B cells were transfected with the shRNA-PTTG3P (sh-PTTG3P)or control (sh-con) viruses purchased from GeneChem (Shanghai, China). The infection efficiency was confirmed by qRT–PCR.
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3

Lentiviral Knockdown of Asporin in Cancer Cells

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The recombinant lentiviruses of Asporin (ASPN) knockdown (shASPN) and the negative control (shCON) were synthesized by GeneChem (Shanghai, China). MKN45 and SGC-7901 cells were infected with lentivirus at a multiplicity of infection (MOI) of 10 using enhanced infection solution (Eni.S) + polybrene. The target sequences of ASPN are as follows: shRNA1, 5'-GCTGTATCTGTCCCACAATCA-3'; shRNA2, 5'-GCTTACCACCAACTTTATTGG-3'; shRNA3, 5'-GCTCTGCCAAACCCTTCTTTA-3'; GAPDH forward, 5’-GGCAAATTCAACGGCACAGT-3’, and reverse, 5’-AGATGGTGATGGGCTTCCC-3’.
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4

Silencing p53 and DR5 in LX-2 cells

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Small-interfering RNA (siRNA) against p53 and scrambled siRNA were synthesized by GenePharma (China), and their sequences were as follows: the p53-specific siRNA (si-p53) 5′-GACTCCAGTGGTAATCTACTT-3′ and scrambled control siRNA (si-con): 5′-UUCUCCGAACGUGUCACGUTT-3′[16] (link). To silence the expression of the p53 gene, LX-2 cells were transfected with si-p53 using Lipofectamine 2000 (Invitrogen, USA) according to the manufacturer's instructions. After transfected for 30 h, the cells were treated with or without the SEA for another 18 h and then harvested for western blot and quantitative real-time polymerase chain reaction (qRT-PCR) assays.
To silence DR5 expression, we transfected shRNA-control (sh-con, Genechem, China) or shRNA-DR5 (sh-DR5, Genechem, China) in LX-2 cells using FuGENE 6 (Promega, USA) according to the manufacturer's instructions. After transfection for 30 h, the cells were treated with or without the SEA for another 18 h and then harvested for western blot and qRT-PCR assays.
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5

Knockdown of p53 and STAT3 in LX-2 cells

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Cells were seeded into six-well plates for 24 h. To knock down p53 expression, ShRNA-p53 (Sh-p53; Genechem, Shanghai, China) or ShRNA-control (Sh-con; Genechem) were transfected into LX-2 cells. Cells were treated with or without Sjp40 (20 μg/ml) 24 h after transfection. Human small-interfering RNAs against STAT3 (Si-STAT3) and a scrambled sequence control (Si-con) were purchased from GenePharma (Shanghai, China). LX-2 cells were transfected with Si-STAT3 or Si-con for 6 h using Lipofectamine 2000 (Invitrogen) and then were treated with or without stimulus for 48 h.
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6

Knockdown of TAK1 Impacts HBV Infection

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The GV248 lentiviral vector sh-TAK1 containing short hairpin RNA targeting sequence (5′- GTGTGTCTTGTGATGGAAT-3′) and the negative control lentiviral vector sh-Con were obtained from Genechem Company Ltd (Shanghai, China) and were used to knock down TAK1 expression. To generate clones stably knock down TAK1, the HepG2-NTCP cells first were infected at a multiplicity of infection of 20 with sh-TAK1 or sh-Con. Stable clones were selected after 2 weeks using puromycin and the expression level of TAK1 was determined by Western blot. HBV infection of HepG2-NTCP cells was performed according to Prof. Wenhui Li’s protocol4 (link). Briefly, HepG2-NTCP cells were seeded in 6-well plates and infected with HBV at 100 genome equivalent (GEq)/cell in the present of 4% polyethylene glycol (PEG 8000; Sigma) for 16 h, and then rinsed three times with phosphate-buffered saline and maintained in the maintenance medium containing 2.5% dimethyl sulfoxide. The supernatant samples were collected at 3, 6 and 9 days post infection and HBsAg and HBeAg were assessed.
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7

Modulating SNHG12 and miR-148a in Cells

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SNHG12 small interfering RNA and overexpression plasmid (si-SNHG12 and SNHG12) or their negative controls (si-con and pcDNA), miR-148a mimic and inhibitor (miR-148a and anti-miR-148a) or their negative controls (miR-con and anti-miR-con), CDK1 overexpression plasmid (CDK1) and its negative control (pcDNA) were designed and synthesized by GenePharma (Shanghai, China). Lentiviral short hairpin RNA targeting SNHG12 (sh-SNHG12) and its negative control (sh-con) were constructed by Genechem (Shanghai, China). Cells were transfected with indicated plasmids using Lipofectamine 3000 (Invitrogen).
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8

Overexpression and Knockdown of DBH-AS1 in Liver Cell Lines

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To obtain cell lines stably overexpressing DBH-AS1, HepG2 and SMMC7721 cells were infected with the Lv-DBH-AS1 and Lv-control viruses (GeneChem, Shanghai, China). To observe the knockdown effects of DBH-AS1 in vitro, Hep3B and SK-Hep1 cells were transfected with the shRNA-DBH-AS1 (Sh-DBH-AS1) or control (Sh-con) viruses (GeneChem). Recombinant lentiviruses containing HBx (Lv-HBx) or control (Lv-con) purchased from LAND (Guangzhou, China) were used to infect HepG2 and LO2 cell lines. The infection efficiency was confirmed by qRT-PCR or western blot.
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9

Lentiviral Knockdown of CXCL5 and CD44 in T24-L Cells

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Lentivirus plasmids containing short hairpin RNA (shRNA) targeting CXCL5 (shCXCL5) and CD44 (shCD44) and a negative control shRNA (shCon) were designed and produced by GeneChem (Shanghai, China). For transfection, T24-L cells were seeded in 6-well plates and allowed to attach overnight; then, the culture medium was replaced with transfection-enhancing solution with lentivirus at an MOI of 30 and 50 μg/ml polybrene. After 16 h of transfection, the transfection medium was replaced with normal medium. The cells were harvested for passage or testing when they reached 80% confluence.
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10

Knockdown of KCNQ1OT1 Suppresses Tumor Growth in Nude Mice

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This animal experiment was approved by the Animal Care and Use Committee of Jining NO. 1 People’s Hospital. First of all, the lentiviral vector (lenti-short hairpin, sh-KCNQ1OT1) for stable expression ofKCNQ1OT1 knockdown and its control (sh-con) were provided by Genechem (Shanghai, China). Moreover, BALB/c nude mice (4–5 weeks old) were purchased from Shanghai Animal Laboratory Center (Shanghai, China), and then mice were randomly divided into two groups (n = 5 per group). Subsequently, 1 × 107 SW480 cells transfected with sh-KCNQ1OT1 or sh-con were subcutaneously injected the left flank of the nude mice. After 7 days of injection, tumor volume was tested every 7 days. Meanwhile, tumors were excised and weighed on day 35 after inoculation. Besides, qRT-PCR and western blot assays were applied to detect the levels of KCNQ1OT1, miR-329-3p, CTNND1, CyclinD1, Cleaved-casp-3, and Bcl-2 in xenograft.
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