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6 protocols using horseradish peroxidase hrp conjugated anti mouse

1

Hypoxia-Inducible Factor Regulation

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Methylmercuric chloride (MeHgCl; Sigma-Aldrich) was dissolved in PBS to form a stock concentration of 10  mM ; MG132; 3,4-Dihydroxybenzoic acid (DHB); cobalt chloride ( CoCl2 ); N-acetyl-cysteine (NAC) and Trolox (6-hydroxy-2,5,7,8-tetramethylchroman-2-carboxylic acid); and 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl diphenyltetrazolium bromide (MTT)] were obtained from Sigma-Aldrich. Cycloheximide (CHX) was purchased from MedChemExpress; 2-methoxyestradiol (2-MeOE2) was purchased from Selleck Chemicals. For Western blotting analysis, the primary polyclonal antibodies to HIF-1α , VEGF-A, GLUT-1, and EPO were obtained from ImmunoWay, and antibodies to HIF-1β and β-actin were obtained from Cell Signaling Technology and CMATAG, respectively. Secondary antibodies used for immunoblotting included horseradish peroxidase (HRP)-conjugated antimouse (Santa Cruz Biotechnology) or anti-rabbit antibodies (Santa Cruz Biotechnology).
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2

Western Blot Analysis of Parasite Proteins

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Parasite proteins isolated from different subcellular fractionations were separated on SDS-polyacrylamide gels and were transferred to polyvinylidene difluoride (PVDF) membranes as previously described (48 (link)). The primary antibodies used were rabbit anti-PfRad51 (1:5,000 dilution) (25 (link)), rabbit anti-PfBlm (1:5,000) (27 (link)), rabbit anti-PfalMre11 (1:5,000) (26 (link)), rabbit anti-HsHistone 3 (1:5,000; Imperial Life Sciences), mouse anti-cytochrome c (1:5,000; Abcam), rabbit anti-GFP (1:5,000; Abcam), and mouse anti-GAPDH (1:5,000; Abcam). The membranes were washed with Tris-buffered saline with Tween 20 (TBS-T) and treated with horseradish peroxidase (HRP)-conjugated anti-mouse (1:10,000; Santa Cruz Biotechnology Inc.) and anti-rabbit (1:10,000; Promega) secondary antibody for 2 h at 4°C. After washes with TBS-T, membranes were developed with a chemiluminescent horseradish peroxidase (HRP) substrate (SuperSignal West Pico Plus; Thermo Scientific) and imaged by using a ChemiDoc Touch imaging system from Bio-Rad.
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3

HA-Tagged Protein Detection Protocol

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GAL-3HA-FOB1 cells were lysed with 20% trichloroacetic acid. Proteins were separated by 12% SDS-polyacrylamide gel electrophoresis and transferred to a poly-1,1-difluoroethene (PVDF) membrane (BioRad). The membranes were incubated with mouse monoclonal anti-HA antibody (Roche) and mouse monoclonal anti-PSTAIR (Sigma), followed by Horseradish peroxidase (HRP)-conjugated anti-mouse (Santa Cruz).
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4

Detecting Protein Targets in Toxoplasma

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Following SDS-PAGE, polyvinylidene difluoride (PVDF) membrane blots were probed with mouse anti-IMC1 (diluted 1:2,000; kindly provided by Gary Ward, University of Vermont), guinea pig anti-PRP1 (1:10,000), mouse monoclonal anti-GRA1 (1:20,000), or CDPK1 nanobody (1 μg/ml, a kind gift of Sebastian Lourido, Whitehead Institute [71 (link)]) followed by probing with horseradish peroxidase (HRP)-conjugated anti-mouse (1:10,000), anti-guinea pig antibody (1:3,000, Santa Cruz Biotech), or in case of the nanobody, anti-penta-His antibody (1:10,000; Qiagen) and detection of signal by chemiluminescent HRP substrate (Millipore).
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5

Muscle Protein Signaling Pathway Analysis

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The soleus fibers were homogenized using a lysis buffer and centrifuged at 13,000 rpm for 20 minutes. Protein concentration was measured via colorimetric protein assay kit (Bio-Rad, Hercules, CA, USA). Proteins (30 µg) were separated on sodium dodecyl sulfate-polyacrylamide gels and transferred onto a nitrocellulose membrane on ice. The membranes were incubated using 5% skim milk with Tris-buffered saline which is containing 0.1% Tween-20 (TBS-T) and then, incubated overnight at 4°C with the following primary antibodies: GAPDH, Bcl-2, Bax, cytochrome c (Santa Cruz Biotechnology, Santa Cruz, CA, USA), Akt, p-AKT, mTOR, p-mTOR, p70S6k, p-p70S6k, 4EBP1, p-4E-BP1, FOXO3, MuRF1, and Atrogin-1 (Cell Signaling Technology, Danvers, MS, USA). The membranes were incubated for 1 hour with secondary antibodies: horseradish peroxidase (HRP)-conjugated anti-mouse (Santa Cruz Biotechnology) or goat anti-rabbit IgG-heavy and light chain antibody HRP conjugated. After washing 3 times in TBS-T, an enhanced chemiluminescence detection kit (Thermo Fisher Scientific, Waltham, MA, USA) was used to detect the band. Protein bands was expressed using a ChemiDoc (Bio-Rad). All protein levels were calculated with GAPDH as a ratio.
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6

Western Blot Analysis of HIV Regulatory Proteins

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Proteins were separated by SDS-PAGE before being subjected to western blot. The following antibodies were from Santa Cruz: Myc (9E10), DDX17 (sc-398168), Abcam: HIV-Tat (ab43014), HEXIM1 (ab25388), Cyclin T1 (ab176702), CDK9 (ab6544), Rabbit Isotype matched control IgG (ab27478), Rabbit c-Myc (ab39688) and GAPDH (ab9485). DDX5 antibody PAb-204 was a kind gift from Dr Frances Fuller-Pace (Dundee). HIV-1 p55/p24 (ARP, NIBSC) [57 (link)]. Mouse IgG Isotype control (401402) was obtained from Biolegend. The following secondary antibodies were from: Cell Signalling: horseradish peroxidase (HRP)-conjugated anti-mouse (#7076, 1: 2000), Santa Cruz: HRP-conjugated anti-rabbit (#2123, 1: 2000). Detection was carried out using ECL prime (Amersham) per the manufacturer’s instructions.
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