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12 protocols using cd19 buv395

1

Multiparameter Flow Cytometry Analysis

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Flow cytometry was performed as previously described [9 (link)]. The following Abs were used: BV785-CD3ε (Clone 145-2C11), BV711-CD8α (Clone 53–6.7), APC/Cy7-CD11b (Clone M1/70), BV-421-Gr-1 (Clone RB6-8C5), PE/Cy7-CD11c (Clone N418), FITC-CD45 (Clone I3/2.3), PerCP/Cy5.5-IAb (Clone AF6-120.1), BV605-NK1.1 (PK136) were from Biolegend. BUV395-CD4 (Clone GK1.5) and BUV395-CD19 (Clone 1D3) were from BD Biosciences. To obtain single-cell suspensions, LNs were first incubated in Liberase TM (1.67 Wünsch units/mL) (Sigma) in PBS with 25 mM HEPES for 30 min at 37°C before adding PBS with 25 mM HEPES + 10% FBS to halt the digestion process, followed by mechanical disruption of the tissue through a 70-μm filter. Cells were washed once with FACS buffer (PBS with 1% BSA + 0.1% sodium azide) before surface staining. For analysis, samples were acquired using either a BD LSR II flow cytometer or a BD Fortessa flow cytometer (BD Biosciences), and data were analyzed with FlowJo software (TreeStar). For cell sorting, samples were acquired with a BD FACS Aria III sorter (BD Bioscience).
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2

Isolation and Identification of Human Pro-B Cells

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Human cord blood were diluted by PBS buffer and the light-density mononuclear cells were obtained after centrifugation by treated with the Lymphoprep kit. And then the mononuclear cells were stained by FITC-CD34 (Biolegend), APC-CD10 (Biolegend) and BUV395-CD19 (BD, bioscience) at 4°C for 30min in PBS with 2% FBS. Cells were washed twice after incubation with three antibodies, and then suspended by PBS with 2% FBS at 5 million cells/mL for single cell sorting. The stained mononuclear cells were sorted and analysed on a FACSAria III SORP (Becton Dickinson), which equiped with 355nm, 488nm, and 630nm laser. B cells expressed CD34, CD10 and CD19 simultaneously were sorted as human pro-B cells as previous reported (Reynaud et al., 2003 (link); McWilliams et al., 2013 (link)). Antibodies were listed at Key Resources Table. FlowJo_V10 were used for data analysis.
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3

Immunophenotyping of B cell subsets in severe asthma

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Peripheral blood mononuclear cells (PBMCs) were isolated by Ficoll-Paque (GE Healthcare, Marolles-en-Hurepoix, France) gradient centrifugation and frozen. Immunophenotyping of PBMCs from 9 severe asthmatic patients was performed using flow cytometry. PBMCs from 10 HV were analyzed as controls. PBMCs were rapidly thawed by placing cryovials at 37°C, washed and stained according to standard protocols using the following mAbs: CD19-BUV395, CD27-BUV737, CD38-BV605, CD24-PerCP-Cy5.5, and CD9-BV510 (BD Biosciences, Le Pont de Claix, France). These markers were used to distinguish CD19+ B lymphocytes, CD19+CD27+ memory cells, CD19+CD27 naïve cells, CD19+CD24hiCD38hi transitional cells, CD19+CD24CD38+ plasma cells, and CD19+CD9+ Bregs. For all experiments, dead cells were excluded using the Zombie NIR™ Fixable Viability kit (BioLegend, London, UK). Human anti–IL-10 (BD Biosciences) was used to inhibit the IL-10 pathway. Samples were assessed on a BD LSRFORTESSA X-20 (BD Biosciences, Le Pont de Claix, France), and the data were analyzed using FlowJo v10 software (FlowJo LLC, Ashland, OR, USA).
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4

Comprehensive Immune Cell Profiling

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A panel of monoclonal antibodies was developed to enable phenotypic characterization of B and T lymphocyte subpopulations: CD3-FITC, CD4-APC, CD25-BV421, FoxP3-PE, CD19-PeCy7, CD9-BB700 (BD Bioscience, France), CD24-BV510, and CD38-APC-Cy7 (Sony Biotechnology, UK); hematopoietic stem and progenitor cells: CD34-BV421 (Biolegend, France), cKit-APC-H7, CD135-PE, lineage-FITC, Sca-1-BV510, CD16/32-PerCPCy5.5, CD127-APC (BD Bioscience), and TLR-4-PeCy7 (Biolegend); and dendritic cells: CD11c-PeCy7 (eBioscience, France), CMH-II-FITC, Siglec-H-BV510, CD11b-APC-H7, and CD103-PerCP5. For intracellular staining, cells were fixed and permeabilized using a Cytofix/Cytoperm kit (BD Biosciences). For in vitro human B cell differentiation experiments, cells were stained with Fixable Viability Dye eFluor 450 to identify dead cells, followed by staining with CD25-BV605 (Biolegend), CD19-BUV395, CD9-FITC, CD27-BUV737, CD38-BV711 and intracellular IL-10-PE (BD Bioscience). Cells were analyzed on a Canto II flow cytometer (BD Biosciences). Data were acquired using Diva 8.0 software and analyzed with FlowJo X (TreeStar, Williamson Way, Ashland, USA). Fluorescence minus one staining controls were used for all panels, and dead cells were removed using viability staining.
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5

Comprehensive B Cell Immunophenotyping

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Bone marrow of Myce and littermate wild‐type control were harvested into single‐cell suspension with red cell lysis and stained with CD19‐Pacific Blue (1D3, BD, NJ, USA), B220‐PE cy7 (RA3‐6B2, BD), CD24‐APC (M1/69, in house), IgM‐FITC (331.12, in house), CD43‐PE (S7, BD). Spleen red cell lysed single cell suspensions were stained with CD19‐BB700 (1D3, BD), B220‐APC (Thermo Fisher, Waltham, USA), CD23‐PE cy7 (B3B4, Thermo Fisher), CD21‐BV421 (7E9, BioLegend, San Diego, USA), CD138‐PE (281–2, BD). The peritoneal cavity wash was stained with CD19‐PE (ID2, in house), B220‐APC (RA3‐6B2, Thermo Fisher), CD23‐PE cy7 (B3B4, Thermo Fisher), CD5‐BB700 (53–7.3, BD), CD11b‐eFlour450 (M1/70, Thermo Fisher). Lymph node and thymus of single cell suspensions were stained with CD19‐BUV395 (1D3, BD), (TCRβ‐PE (H57‐597, BD), CD4‐BV421 (GK1.5, BioLegend) and CD8a‐PerCp/Cy5.5 (53–6.7, eBioscience, San Diego, USA). Flow cytometry analysis was performed on a BD LSRFortessa X‐20 analyzer (BD).
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6

Multiparametric Flow Cytometry of Stimulated PBMCs

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Stimulated PBMCs were cultured with Brefeldin A (3µg/ml; eBioscience) added for the last 4hrs. Cells were collected into RPMI/10% FBS with attached cells lifted with Cellstripper (Corning). All reagents were from Biolegend unless otherwise stated. Cells were washed and stained with Zombie Aqua fixable dye, CD19 BUV395 (BD Biosciences), CD4 PE, CD8 PerCP-Cy5.5, CD3 APC-Cy7 and/or CD11b PE-Cy7. Cells were washed, fixed with Fixation Buffer and treated with Permeabilization Buffer, then stained with IL-17F eFluor 660 (eBioscience) and IL-17A BV421 or TNFα APC. Data were acquired on a BD Biosciences LSR II then analyzed with FlowJo 10.0.7. Gating was based on fluorescence minus one and isotype controls. Fig. S1 details gating strategy.
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7

Multicolor Flow Cytometry Analysis of Immune Cells

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The following antibodies were used to stain PCW cells: B220 PerCP-Cy5.5 (BioLegend, 103236), CD5 PE-Cy7 (BioLegend, 100622), CD19 BUV395 (BD Biosciences, 563557), IgM APC (Biolegend, 406509), PD-L2 BV421 (BD Biosciences, 564245), CD11b APC-Cy7 (BioLegend, 101226), Live/dead Ghost violet 510 (Tonbo Biosciences, 13-0870). For cells isolated from PZTD+/+ mice, ZsGreen fluorescent protein was analyzed using the same channel as FITC. For cells isolated from CD19-Cre+/- PTZD+/+ mice, TdTomato fluorescent protein was analyzed using the same setting for TexasRed. To analyze TILs, CD45 PerCP-Cy5.5 (eBioscience, 45-0451-80), was added to the above panel replacing B220 for leukocyte gating. The stained samples were analyzed at the Boston University Medical Campus Flow Cytometry core facility using a BD LSRII flow cytometer and a Beckman Coulter MoFlo for cell sorting. Live leukocytes were gated by forward and side scatters, live/dead Ghost violet 510 and CD45 staining. B1 cells were gated as B220IntCD5Int population from the live leukocyte gate. L2pB1 cells were gated as PD-L2+IgM+ from the B1 cell gate. In the transgenic-knock in mice, L2pB1 cells were also identified by the expression of ZsGreen and TdTomato (Supplementary Figure S1).
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8

Characterizing Antigen-Specific B Cells in Mice

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GC responses were analyzed as previously reported (60 (link)): BALB/c mice were immunized with NE formulations containing 10 μg of eOD-GT8, 5 μg of 3M-052, and 0.1 μg of squalene oil. After 12 days, mesLNs were collected and single-cell suspensions were prepared. Cells were first incubated with live/dead stain (Zombie UV, BioLegend) at 1:750 dilution in 100 μl of PBS for 10 min at 25°C and then with antimouse CD16/32 antibody at 1:100 dilution in 100 μl of fluorescence-activated cell sorting buffer for 10 min at 25°C. Cells were stained against antimouse CD90.2 BV785 at 1:200 (clone 30-H12; BioLegend), CD19 BUV395 at 1:200 (1D3; BD Biosciences), CD38 FITC at 1:200 (90; BioLegend), GL7 PerCP-Cy5.5 at 1:150 (GL7; BioLegend), IgA AF647 at 1:100 (SouthernBiotech), eOD-tetramer BV605 at 1:100, and eOD-tetramer BV421 at 1:100 [tetramers formed by incubating 4 equivalents of biotinylated eOD with 1 equivalent of streptavidin-BV605 or streptavidin-BV421 (BioLegend) 18 hours at 4°C, prior to staining] in 100 μl of flow cytometry buffer for 20 min at 25°C. Cells were washed twice and fixed using 2% PFA. Data acquisition was performed using BD FACSymphony A3 and analyzed with FlowJo 10.
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9

In vivo Uptake of Fluorescent Antigens

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In vivo uptake studies were carried out following procedures we previously developed (60 (link)): BALB/c mice were immunized with NE formulations containing 10 μg of AF647-eOD-GT8, 5 μg of green fluorescent BODIPY FL C12 cholesteryl ester, 5 μg of 3M-052, and 0.1 μg of squalene oil. Twenty-four hours later, mesLNs were collected and single-cell suspensions were prepared. Cells were first incubated with live/dead stain (Zombie UV, BioLegend) at 1:750 dilution in 100 μl of PBS for 15 min at 25°C and then with antimouse CD16/32 antibody (TruStain FcX, BioLegend) at 1:100 dilution in 50 μl of flow cytometry buffer for 10 min at 25°C. Cells were stained against antimouse CD3ε PE-CF594 (clone 145-2C11; BD Biosciences), CD19 BUV395 (1D3; BD Biosciences), CD11b BUV737 (M1/70; BD Biosciences), CD11c BV711 (N418, BioLegend), F4/80 PE (BM8; BioLegend), Ly6C BV785 (HK1.4, BioLegend), and Ly6G BV421 (1A8, BioLegend) at 1:100 dilution in 100 μl of flow cytometry buffer for 15 min at 25°C. Cells were washed twice and fixed using 2% PFA. Data acquisition was performed using BD FACSymphony A3 and analyzed with FlowJo 10.
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10

Allergic Lung Inflammation in Mice

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Allergic lung inflammation was induced in Myce and wildtype mice using intraperitoneal ovalbumin (OVA)/alum sensitization followed by nebulized OVA challenge as described previously.
22 (link) On the day after the final challenge, ~200 μL of blood was collected into non‐heparinized tubes by retro‐orbital bleeding, and the mice were then killed by CO2 inhalation after which BAL was performed (250 μL twice with sterile PBS). Flow cytometry was performed fresh on BAL cells using the following staining panel: CD19‐BUV395 Clone#1D3, CD8a‐PerCPeFluor710 Clone#52–6.7, SiglecF‐PE Clone#E50‐2440 (BD), Ly6c‐eFluor450 Clone#HK1.4, CD11c‐FITC Clone #N418, GR1‐PECy7 Clone#RB6‐8C5, TCRβ‐APCeFluor780 Clone #H57‐597 (eBioscience), CD4‐Alexa647 Clone#GK1.5, CD11b‐Alexa700 Clone#M1/70 from WEHI Antibody Facility (Supplementary table 4). Flow Cytometry was performed on a BD LSRFortessa X‐20 analyzer (BD). SYTOX Blue Dead Cell Stain was used to exclude dead cells from analysis and SPHERO Rainbow Beads (BD) were used to calculate absolute cell counts.
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