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14 protocols using vacutainer serum collection tube

1

Assessing Kidney Function Post-Ischemia

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The function of postischemic kidneys was assessed by measuring serum BUN and creatinine levels. For serum preparation, blood was collected in BD Vacutainer serum collection tubes (BD, Franklin Lakes, NJ, United States) and allowed to clot for 1 h at room temperature. After centrifugation at 3000 × g for 15 min, the serum supernatant was transferred to a clean tube and immediately stored at 80°C. The samples were evaluated using a Hitachi 7180 automatic biochemical analyzer (Hitachi, Shanghai, China).
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2

Postrecovery SARS-CoV-2 Serum Sampling

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All serum samples were obtained via antecubital venipuncture and collected into BD Vacutainer serum collection tubes in using protocols approved by the UCSF Institutional Review Board and in accordance with the Declaration of Helsinki. All patients had a positive clinical nasopharyngeal RT-PCR test to document SARS-CoV-2 infection. At the time of their blood draw, more than 14 days had elapsed since their COVID-19 respiratory and constitutional symptoms had resolved. De-identified serum was aliquoted, flash frozen in liquid nitrogen, and stored at −80°C in single-use aliquots. Control samples were from healthy individuals obtained before the emergence of SARS-CoV-2. Heat-inactivation of sera was performed by incubating the samples at 56°C for 60 minutes.
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3

HLA-DRB1 Alleles in P. vivax Endemic Areas

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Twenty-nine people carrying HLA-DRB1 typing for HLA-DRB1*04, HLA-DRB1*07, HLA-DRB1*11 and HLA-DRB1*13 alleles were selected from P. vivax endemic areas of Colombia's Córdoba and Chocó departments. Eight people carrying the same HLA-DRB1* alleles from a non-endemic area formed the control group. About 40 mL peripheral blood was collected in citrate phosphate dextrose (CPD) tubes and 6 mL peripheral blood in BD vacutainer serum collection tubes (BD Vacutainer Oakville, ON). Thick blood smears were used for confirming samples negative for malaria. Peripheral blood mononuclear cells (PBMC) were isolated by Ficoll-Paque PLUS (GE Healthcare) gradient centrifugation. Briefly, the buffy coat was resuspended in RPMI 1640 (Gibco) and separated by Ficoll, spinning at 1,000 g for 30 min at room temperature (RT). Mononuclear cells were collected, washed and spun at 800 g for 10 min, twice. Cell viability was evaluated by trypan blue exclusion test and cells were counted in a Neubauer chamber.
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4

Serum collection and storage protocol

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Blood samples were collected from 146 consenting patients using an 18–20 gauge syringe needle and placed in BD Vacutainer serum collection tubes before being centrifuged at 2500× g for 20 min at room temperature within 60 min. The serum supernatant was extracted and frozen as 500 uL aliquots and stored at −80 °C.
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5

Serum Chemistry Analysis in Mice

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At the experimental endpoint, blood samples were collected from mice, and serum was isolated using BD Vacutainer® serum collection tubes (BD, 367814). The serum chemistry test was performed by the Department of Clinical Pathology, College of Veterinary Medicine, NC State University.
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6

Comprehensive Assessment of Health Factors

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The Patient-Reported Outcomes Measurement Information System (PROMIS) (Cella et al., 2010 (link)) was used to collect data on alcohol use, anger, anxiety, depression, fatigue, nicotine dependence, physical function, sleep disturbance and social isolation. Smoking and exercise status were obtained based on two questions during a medical history interview: (a) “Do you smoke cigarettes or use other tobacco products regularly?” and (b) “Do you exercise regularly?”. Medication status was defined as having taken any psychotropic medication within the past 6 weeks. Venous blood was collected in BD Vacutainer serum collection tubes, and then centrifuged at 1300g for 10 min at room temperature, serum was removed and aliquoted. Serum aliquots were stored at −80°C until analysis.
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7

Blood Collection and Storage Protocol

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A trained phlebotomist obtained blood in two BD Vacutainer serum collection tubes from participants via venipuncture between 7am and 12pm. Participants were not required to fast prior to the blood draw. Blood samples were collected at LIBR and transported to The University of Oklahoma Integrative Immunology Center (IIC) where they were stored and processed. Serum samples were aliquoted and stored in secure freezers at −80°C until analysis.
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8

Biomarker Measurement in Maternal Plasma

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Blood samples were collected into four collection tubes [two Vacutainer serum collection tubes containing no additives (Becton Dickinson, Franklin Lakes, NJ), one Monoject plasma collection tube containing 0.10 mL of 15% K3EDTA (Covidien, Mansfield, MA), and one Vacutainer plasma collection tube containing 15 mg of sodium fluoride and 12 mg of potassium oxalate (Becton Dickinson) for glucose determination]. Following collection, all tubes were inverted several times. Plasma tubes were immediately placed on ice, while serum tubes were allowed to clot before being placed on ice. Between 1 and 8 h after collection, all samples were centrifuged at 1,500 × g at 4°C for 30 min. Plasma and serum were transferred into multiple 2-mL microcentrifuge tubes and stored at −20°C until analysis.
Maternal plasma glucose, serum urea N, and serum non-esterified fatty acids (NEFA) were analyzed as described in Niederecker et al. (2018) (link), and plasma triglycerides were analyzed as described in Larson-Peine et al. (2022) (link). For each assay, samples were analyzed in duplicate, and pooled control samples were used. The intraassay and interassay CV were 2.7% and 2.2% for plasma glucose, 3.2% and 3.7% for serum urea N, 3.4% and 5.1% for serum NEFA, and 2.8% and 2.3% for plasma triglycerides, respectively.
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9

Calf Blood and Colostrum Sampling

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After each calf stood but before it suckled, both cow and calf were removed from the pen, and the cow was directed into a nearby chute. Cow jugular blood samples were collected (76.3 ± 77.5 min post-calving) into the same 4 tubes and processed as previously described for gestational blood sampling. The most full rear quarter was selected based upon visual inspection and palpation and was hand-milked completely prior to the calf suckling (57.5 ± 17.5 min post-calving) at described in Rathert-Williams et al. (2023) (link). Colostrum volume and weight were recorded, and subsamples were aliquoted and stored at −20°C for later analysis.
Calf jugular blood samples were collected at 0 h of age (post-standing but pre-suckling; 34.3 ± 20.2 min of age), and at 48 h of age (48.2 ± 0.5 h of age). Blood was collected into 4 tubes at each time point, including 2 Vacutainer serum collection tubes containing no additives, 1 Monoject plasma collection tube containing 0.10 mL of 15% K3EDTA, and 1 Vacutainer plasma collection containing 10.8 mg of K2EDTA (6 mL draw; Becton Dickinson, Franklin Lakes, NJ) for mineral determination, and processed as previously described for cow samples.
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10

Neutralizing Antibody Screening Assay for AAV2

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Whole blood was obtained in Vacutainer Serum Collection Tubes (Becton Dickinson) and serum was collected following centrifugation at 1500 rcf/g  for 10 min and stored at −80C until analysis. Neutralizing antibody screening assays were carried out as previously described53 (link). Briefly, assays were performed in 96 well format with 5 × 104 CHO-Lec2 cells per well. Serial dilutions of study participant serum were pre-incubated with 1 × 109 genome copies of AAV2 reporter virus for 1 hour at 37 °C and then added to cells that were infected with Adeno Helper virus. After 48 hours, Promega Bright-Glo substrate was added to the cells and luciferase expression was quantified using the Biotek Synergy Mx luminometer. Both positive and negative monkey sera controls were included with each assay. All animals selected for the study had less than 50% inhibition of transduction when serum was diluted to 1:20.
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