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6 protocols using anti dnam 1

1

Evaluating iNK Cell Cytotoxicity

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iNK cells were incubated for 30 minutes at 37°C with the following monoclonal antibodies: anti-NKG2D (1D11) at 20 μg/ml, anti-NTB-A (NT7) at 5 μg/ml, anti-NKp30 (P30–15) at 10 μg/ml, anti-LFA-1 (HI111) at 10 μg/ml (all from Biolegend), and anti-DNAM-1 at 10 μg/ml (102511) (R&D Systems) alone or in various combinations. iNK cells were then co-cultured with OVCAR8 cells for 4 hours in B0 media and analyzed by flow cytometry for intracellular IFN-γ production using a fluorescently conjugated anti-IFN-γ (B27) (Biolegend) antibody.
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2

Multiparameter Flow Cytometry Analysis of NK Cells

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FACS staining was performed using standard procedures. Staining was performed with the following conjugated antibodies: anti CD56, anti CD3, anti CD16 (all from Biolegend), anti 2B4, anti NKp46, anti CD69 (BD), anti NKp30, anti NKp44, anti NKG2D, anti DNAM1, anti NKG2C (R&D), anti CEACAM1 (R&D), anti TIGIT (eBioscience), anti NKG2A (R&D). Antibodies against chemokine receptors that were used included anti CCR1, anti CCR2, anti CCR3, anti CCR5, anti CCR7, anti CCR10, anti CXCR1, anti CXCR2, anti CXCR3, anti CXCR4, and anti CX3CR1. Other antibodies used were: anti CD57 and antibodies against the killer cell immunoglobulin-like receptors-KIR2DL1/DS1, anti KIR2DL2/DL3, and anti KIR3DL1/KIR3DS1. Unless otherwise noted, all antibodies in this study were purchased from Biolegend. In all FACS results shown in this paper, dead cells, neutrophils, and monocytes were excluded from analysis. We used the FCS Express version 4 program for FACS analysis. We performed correction for the MFI of different unrelated FACS staining, by dividing the individual staining MFI (of blood and SFs NK cells) by the background isotype control of the same staining (normalized MFI).
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3

Profiling NK Cell Exosome Proteins

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NK cells and their exosomes were resuspended in RIPA lysis buffer and incubated for 30 min or 15 min in ice, centrifuged at 20,000× g for 20 min and supernatants collected and transferred in a clean tube. Then, cell and exosome lysates were quantified by Bradford assay and diluted in LDS-sample buffer (Thermofisher Scientific, Waltham, MA, USA). Thus, lysates were separated by SDS-page gel, under reducing or not reducing conditions, and transferred on nitrocellulose filters. Following blocking with TBS 5% milk, membrane filters were incubated with antibodies anti-CD63, anti-CD81 (Santa Cruz Biotechnology, Dallas, TX, USA), anti-Calnexin (Cell Signaling, Danvers, MA, USA), anti-DNAM1 (kindly provided by Dr Pende D.), LFA1 (R&D Systems, Minneapolis, MN, USA) and anti-TSG-101 (Abcam, Cambridge, United Kingdom). Then, filters were incubated with HRP-conjugated secondary anti-mouse or rabbit antibodies (Southern Biotech, Birmingham, AL, USA) for 1 h and signals detected with ECL method (Thermo Fisher Scientific, Waltham, MA, USA) by Uvitec (Cleaver Scientific, Warwickshire, UK). Densitometric analysis was performed with UVI-TEC NineAlliance analysis software.
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4

Antibody Panel for NK Cell Characterization

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The following antibodies were used: anti‐CA125 (OV185:1, Imgenex), anti‐MICA (159227, R&D Systems), anti‐MICB (236511, R&D‐bs‐6933R, Bioss), anti‐ULBP1 (H‐46), anti‐ULBP2 (H‐48; N‐16), anti‐ULBP3 (H‐45), anti‐CD63 (MX‐49.129.5), anti‐CD81 (5A6) all from Santa Cruz; anti‐DNAM‐1 (102511, R&D); anti‐NKG2D (BD Biosciences); Alexa 647‐conjugated CD56 (B159), all from BD Pharmingen; FITC‐conjugated anti‐CD3 (SK7, BioLegend); FITC‐conjugated anti‐CD63 (CLBGran/12, Beckman Coulter); PE‐conjugated anti‐CD8 (DK25) all from, DAKO A/S; subclass control antibodies anti‐mouse IgG1 and IgG2b (DAK‐GO1 and DAK‐GO9), rabbit IgG, FITC‐conjugated goat anti‐mouse IgG, all from DAKO.
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5

Multiparametric Flow Cytometry of PBMC

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Freshly isolated PBMCs were stained with antibodies specific to the cell surface markers of T cells, B cells, and the NK lymphocyte lineage, including anti-CD3, CD16, anti-CD19, CD56, CD4, CD8, γδ TCR (BD Biosciences, San Jose, CA, USA), anti-NKG2D, and anti-DNAM-1 (R&D Systems, Minneapolis, MN, USA). The cells were also stained with NIR zombie dye (BioLegend, San Diego, CA, USA) to exclude dead cells from the analysis. The proportion of circulating regulatory T cells (cTreg) was assessed in cryopreserved PBMCs. The stained cells were analyzed using a BD Canto instrument (BD Biosciences), and the data were analyzed using the FlowJo software package (version 10.1, Tree Star, Ashland, OR, USA).
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6

51Cr-release Assay for NK Cell Cytotoxicity

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Target cells were loaded for 1 h with 50 μCi of 51Cr (PerkinElmer, Massachusetts), washed twice and incubated with fresh or activated NK cells at different E:T ratios (1:1, 3:1 and 10:1) in 200 μL of complete RPMI in 96-well U-bottom tissue culture plates at 37 °C in a 5 % CO2.
After a 4-h incubation period, the supernatants were harvested and counted for released radioactivity in a gamma counter (CRC-55tW Capintec), within a 51Cr sensitivity energy window (300–400 keV). The specific lysis of target cells was calculated as follows: Percentage of specific lysis = (experimental release – spontaneous release)/(maximum release – spontaneous release) × 100. Spontaneous release was calculated from target cells without effector cells. Maximum release was determined by incubating target cells with 4 % SDS detergent. In all experiments, the spontaneous release was < 20 % of maximum release.
For NK cells blocking receptor experiments, activated NK cells were pre-incubated with 10 μg/mL of anti-NKG2D (clone 149810, R&D Systems), 10 μg/mL of anti-DNAM-1 (clone 102511, R&D Systems), and 0.5 μg/mL of anti-FasL (clone ZB4, Merck Millipore, Germany), individually or in combination, before co-culture with tumor target cells.
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