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4 protocols using myd88

1

Western Blot Analysis of Protein Targets

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Whole-cell protein lysates were solubilized in 100-200 μl of radioimmunoprecipitation assay (RIPA) lysis buffer (Beyotime, China) supplemented with a 1% protease inhibitor cocktail (Beyotime, China) for 20 min on ice. The protein concentration was determined using a BCA protein assay kit (Beyotime, China). The proteins (30 μg) were denatured and separated on an 8%-15% discontinuous SDS-polyacrylamide gel (SDS-PAGE) by electrophoresis and subsequently electrophoretically transferred to a polyvinylidene difluoride (PVDF) membrane. After blocking with 5% non-fat dry milk in Tris-buffered saline with 0.1% Tween-20 (TBST) for 2 h at room temperature, the PVDF membrane was incubated overnight at 4 °C with the appropriate primary antibody for TLR7 (1:100; Novusbio, USA), MyD88 (1:200; Boster, China), IRF7 (1:1000; Abcam, USA), beclin 1 (1:200; Boster, China), SQSTM1 (1:200; Boster, China), EV71/CA16-VP1 (1:1000; Millipore, USA) or GAPDH (as a loading control, 1:10000; Abmart, China). Then, the membrane was extensively washed three times with TBST prior to incubation for 1 h at room temperature with the corresponding secondary antibody (Abmart, USA) at a dilution of 1:12,000. Finally, the membrane was again extensively washed three times with TBST and then visualized using enhanced chemiluminescence reagents (Beyotime, China) and X-ray films (Kodak, Japan).
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2

TLR4 Pathway Modulation in Breast Cancer

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MCF-7 and MDA-MB-231 cells in LPS group were treated with 2 µg/ml LPS for 48 h. In TLR4 blocking group, 100 nmol/L eritoran was added to the cell culture for 30 min prior to the addition of 2 µg/ml LPS for 48 h. For western blot analysis, 1×106 cells were lysed in modified RIPA buffer (Beyotime, Shanghai, China). The protein concentration was measured by BCA Protein Assay Kit (Beyotime) and samples were loaded on 10% SDS-PAGE. Following electrophoresis, the proteins were transferred to a BioTrace PVDF membrane (Pall Life Sciences, Ann Arbor, MI, USA) and blocked in 5% non-fat dried milk for 1 h at room temperature and incubated with rabbit antibodies against TLR4 (1∶1000; Abcam, Cambridge, MA, USA), MyD88 (1∶500, Boster, Wuhan, China) and GAPDH (1∶5000, Abcam, Cambridge, MA, USA) overnight at 4°C. After washing three times with Tris-buffered saline Tween 20 (TBST), membranes were incubated with anti-rat IgG (1∶5000, Bioworld, Dublin, OH, USA). The membrane was washed three times with TBST, and signals were detected by enhanced chemiluminescence system (Amersham Pharmacia Biotech, Bucks, UK).
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3

Analyzing NF-κB Pathway Activation in 293T Cells

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Six-well plates containing 293T cells were transfected with or without pEGFP-N1-NS1 (4 μg). After the cells were transfected with NS1 for 0, 1, 3, 6, 12, 24, 36, and 48 h, the cytoplasmic and nuclear protein were extracted using a nuclear and cytoplasmic extraction kit (Boster, China) according to the manufacturer's instructions [26 (link)]. The protein concentration was measured using BCA Protein Assay Kit (Boster), and the collected protein was stored at −80°C until use.
For the total protein treatment, the cells were collected at 0, 1, 3, 6, 12, 24, 36, or 48 h following plasmid transfection. The protein extracts were prepared from cells by suspension in lysis buffer containing protease inhibitor cocktail for 30 min on ice. Then 20 μg protein from each sample was used for western blot analysis as previously described [27 (link)]. The following rabbit polyclonal antibodies were used as primary antibody of the corresponding proteins: p65 with 1:1,000 dilution (Proteintech, China), phospho-p65 with 1:1000 dilution (p-p65 Ser536, Cell Signaling Technology, America), IκBα with 1:1,000 dilution (Proteintech), MyD88 with 1:100 dilution (Boster, China), TLR2 with 1:100 dilution (Boster),β-actin (1:1,000, Proteintech),and TBP (1:1,000, Proteintech). A HRP-conjugated goat anti-rabbit secondary antibody (1:5,000, Proteintech) were used in this study.
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4

Immunohistochemical Analysis of TLR4 and MyD88

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The method used for the immunohistochemical analysis was modified from previously described methods [95 (link)]. Briefly, the sectioned tissues were deparaffinized, rehydrated, and incubated with bovine serum albumin (BSA, 5%, Biosharp, Hefei, China) for 30 min. Then, the slices were incubated with specific primary antibodies for TLR4 (Bioss Antibodies, Beijing, China) and MyD88 (Boster Biological Technology Co. Ltd., Wuhan, China) at 4 °C overnight. After being washed three times with PBS, the sections were incubated with a secondary antibody (Servicebio Technology Co., Ltd. Wuhan, China) for 30 min. The slices were treated with diaminobenzidine (DAB; Servicebio Technology Co., Ltd., Wuhan, China), counterstained with hematoxylin, and visualized with a microscope (Olympus, Tokyo, Japan). For immunohistochemical staining, the average integrated positive area from three randomly selected regions was calculated using Image-Pro Plus 6.0 software (Media Cybernetics, Inc., Bethesda, MD, USA).
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