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5 protocols using anti eomes dan11mag

1

Fluorophore-conjugated antibodies for flow cytometry

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Fluorophore-conjugated murine antibodies were purchased from eBioscience, including antibodies specific for CD8a (53–6.7; catalog #48-0081-80), Thy1.1 (HIS 51; 25–0900-82), Tim3 (RMT3-23; 14–5870-81), Lag3 (ebioC9B7W; 12–2231-81), CD137 (17B5; 17-1370-80), KLRG1 (2F1; 175893–81), and CD25 (PC 61.5; 17–0251-81). Other antibodies to FasL (K10; 106805), vβ9 (MR10-2; 553201), CD69 (H1.2F3; 104502), CD127 (A7R34; 135013), CD80 (16-10A1; 553768), CD86 (GL-1; 105011), IL-2 (JES6-5H4; 503807), IFNγ (XMG1.2; 505809), TNFα (Mab11; 502913), Bax (6A7; 633801), and Bcl-2 (10C4; 633507) were purchased from Biolegend. 7AAD (A1310) and other antibodies were purchased from BD Biosciences, including Fas (Jo2; 563647), Thy1.2 (53–2.1; 561616), CD103 (M290; 557495), purified rat anti-mouse CD16/CD32 (2.4G2; 12–4875-80), PD-1 (J43; 11–9985-81), and Vβ8.1/8.2 (553185). Antibodies against pAKT (S473; D9E; 5315S) were purchased from Cell Signaling Technology. Anti-Eomes (DAN11 mag; 12–4875-80) and the LIVE/DEAD Fixable Aqua Dead Cell Stain Kit (L34957) were purchased from ThermoFisher. For FasL detection, Panc1 cells were treated for 24 h with 3 µg/ml Batimastat (BB-94; ab146619) purchased from Abcam. Flow cytometry data were acquired on a BD FACS Canto II instrument or LSR II and analyzed with Flowjo v9 software.
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2

Comprehensive Antibody Panel for Murine Cell Analysis

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Antibodies used in the experiments with mouse cells were obtained from Biolegend unless otherwise stated: anti-CD3 (17A2); anti-CD4 (GK1.5); anti-CD8 (53-6.7); anti-B220 (RA3-6B2); anti-CD25 (PC61.5); anti-CD44 (IM7); anti-CD45 (30-F11); anti-CD62L (MEL-14); anti-CD45.1(A20); anti-CD45.2 (104); anti-NKG2D (CX5); anti-PD-1 (29F.1A12); anti-TIM-3 (RMT3-23); anti-CD200 (OX-90); anti-EpCAM (G8.8); anti-MHC I (36-7-5); anti-MHC II (M5/114.15.2); anti-LAG-3 (C9B7W; Thermo Fisher Scientific); anti-pan NK cells (DX5; Thermo fisher); anti-Foxp3 (FJK-16s; Thermofisher); IL-17 (TC11-18H10.1); anti-TNF-α (TN3-19.12); anti-IFN-γ (XMG1.2); anti-Eomes (Dan11mag; Thermo fisher); anti-TOX (REA473; Miltenyi Biotec), anti-pStat1 (Tyr701) (58D6; Cell Signaling); anti-pStat5 (Tyr694) (C71E5; Cell Signaling); anti-Actin (SCBT). The following mAbs raised against human antigens were all purchased from Biolegend: CD3 (OKT3); CD4 (OKT4); CD8 (SK1); NKG2D (1D11); IL-17 (BL168); IFN-γ (B27). Viable cell populations were gated based on forward and side scatters and by fixable blue (Thermo Fisher Scientific) staining. Samples were collected on an LSR II and analyzed with FlowJo software (Tree Star).
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3

Multiparameter Flow Cytometry of Immune Cells

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The following cell surface antibodies (purchased from eBioscience, San Diego, CA) and their respective isotype controls were used: anti-CD8α (53-6.7), anti-CD27 (LG.7F9), anti-CD45.1 (A20), anti-CD45.2 (104), anti-CD107a (1D4B), anti-Thy1.1 (HIS51) anti-PD-1 (J43) and anti-OX40 (OX86). Anti-Vβ8.3 TCR (1B3.3) was purchased from BD Biosciences (Oxford, UK). Direct intracellular staining was carried out using anti-perforin (OMAK-D), anti-T-bet (4B10) and anti-Eomes (Dan11mag) and isotype controls, purchased from eBioscience, San Diego, CA or anti-granzyme B (GRB05) from Life Technologies, UK. Following brief peptide re-stimulation, intracellular staining was performed using anti-IFN-γ (XMG1.2) or anti-TNF-α (MP6-XT22) together with the appropriate isotype controls (BD Biosciences, Oxford, UK). Intra-nuclear staining for BrdU was carried out using anti-BrdU-APC flow kit (BD Biosciences, Oxford, UK), according to the manufacturer's instructions. To detect CD107a cells were restimulated for 4 hours in the presence or absence of 1μM UTY peptide with Golgi-Stop (BD Pharmingen) in the presence of anti-CD107a or isotype control. Cells were then re-surface stained with anti-CD107a or isotype. Flow cytometric analysis was performed on a LSRFortessa or FACs Canto II (BD Biosciences) and cell counting performed on a Coulter Counter (Beckman Coulter).
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4

Comprehensive Immune Cell Profiling

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Single-cell suspensions from the spleen or liver (after lymphocyte isolation on a 37.5%-67.5% Percoll gradient) or small intestine (after digestion with collagenase VIII from Sigma and lymphocyte isolation on a 40–100% Percoll gradient) were incubated with Fc blocking antibody (2.4G2) and the fixable blue dead cell stain kit (Invitrogen). Surface molecules were stained using antibodies against CD45.2 (104), CD3 (145-2C11), CD19 (1D3), NK1.1 (PK136), CD49a (Ha31/8), CD11b (M1/70), CD27 (LG.3A10), CD43 (S7), KLRG1 (2F1), Ly49G2 (4D11), CD69 (H1.2F3), CD11b (M1/70), MHCII (M5/114.15.2), Ly6C (AL-21), CD3 (145-2C11), CD19 (1D3) from BD Biosciences; NKp46 (29A1.4), CD49b (DX5), NKG2A (16a11), Ly49D (4E5), Ly49H (3D10), and F4/80 (BM8) from eBioscience and CD11c (N418) and Ly6G (1A8) from BioLegend. For intracellular staining, cells were fixed and permeabilized with an intracellular staining kit (eBioscience) and the following antibodies were used: anti–GR XP rabbit mAb (D8H2) and rabbit mAb IgG XP (DA1E) from Cell Signaling Technology; anti–IFN-γ (XMG1.2) from BioLegend; anti–Rorγt (Q31-378), anti-TNF (MP6-XT22), anti–granzyme B (GB11), anti-Ki67 (B56), and anti–IL-10 (JE5-16E3) from BD Biosciences; and anti-Eomes (Dan11mag) from eBioscience.
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5

Multiparameter Immune Cell Phenotyping

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Single-cell suspensions were generated from spleen and lymph nodes as designated. Cells were stained with the following extracellular antibodies: anti-CD4 (RM4-5), anti-CD8 (53-6.7), anti-CD44 (IM7), anti-CXCR3 (CXCR3-173), anti-CD3ε (145-2C11), anti-CD45.1 (A20), anti-CD45.2 (104), anti-KLRG1 (2F1), and anti-CD127 (A7R34). Antibodies were purchased from eBioscience, BD, or Tonbo. LCMV NP118–126 and L. monocytogenes LLO91–99 tetramers were provided by the National Institutes of Health Tetramer Facility. For intracellular staining, cells were fixed with the FoxP3 Fix/Perm kit (eBioscience) and stained with the following antibodies: anti-Eomes (Dan11mag), anti–T-bet (4B10), anti–IFN-γ (XMG1.2), and anti-TNF (MP6-XT22).
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