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Plh spsgrna2

Manufactured by Addgene

The PLH-spsgRNA2 is a lab equipment product. It serves the core function of gene editing and manipulation. No further details can be provided while maintaining an unbiased and factual approach.

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3 protocols using plh spsgrna2

1

CRISPRa-mediated 3'RR IgH Enhancer Activation

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To activate the 3′RR IgH enhancer, we exploited the CRISPRa technology (40 (link)). The sgRNA (hs1.2 and hs4) sequence was obtained from previously published report (61 (link)). Briefly, oligonucleotides were annealed in the following reaction: 10 μM guide sequence oligo, 10 μM reverse complement oligo, and 50 mM NaCl in tris-EDTA buffer with the cycling parameters of 95°C for 2 min and then ramp down to 25°C at 5°C/min. The annealed oligos were cloned into the sgRNA vector (pLH-spsgRNA2, Addgene, 64114) using a Golden Gate Assembly strategy including 100 ng of circular sgRNA vector plasmid, 0.2 μM annealed oligos, 20 U of Bbs I restriction enzyme, 750 U of T7 DNA ligase (Enzymatics, L6020L), and 1× T7 ligase buffer with the cycling parameters of 37°C for 5 min, followed by 60°C for 5 min. Insertion of sgRNA was validated by Sanger sequencing (Genetic Analyzer, 3130xl). The pcDNA-dCas9-p300C was purchased from Addgene (no. 61357). Briefly, 500 ng of dCas9-p300C expression vector and 500 ng of individual gRNA expression vectors were transfected in Med12KD cells, and cells were incubated for 48 hours. After the incubation, the cells were CIT (+)–stimulated for another 48 hours before collecting the cells used for subsequent analysis.
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2

CRISPR Interference for Enhancer Manipulation

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Site-specific single guide RNAs (sgRNAs) targeting distal enhancers were designed with a public filtering tool (https://zlab.bio/guide-design-resources) to minimize off-target cleavages. For CRISPR interference, sgRNAs were cloned into pLH-spsgRNA2 (Addgene, #64114) through a BbsI site according to the protocol recommended. Lentivirus was generated in HEK293T cells, and Stable cell lines were generated by infecting MDA-MB-231 with lentiviruses expressing dCas9-KRAB-MeCP2 and sgRNAs. Cells were then screened with puromycin (1 μg/ml, Amresco) and hygromycin (200 μg/ml, Roche) for 48 h, and examined by RT-qPCR.
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3

Designing Lentiviral CRISPR Interference System

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Site-specific single guide RNAs (sgRNAs) targeting VSELs were designed with publicly available filtering tools (https://zlab.bio/guide-design-resources) to minimize off-target cleavage. For CRISPR interference, sgRNAs were cloned into the pLH-spsgRNA2 (Addgene, #64114) through the BbsI site according to the protocol recommended by Addgene. Lentivirus was generated by transfecting HEK293T cells with sgRNA expression cocktails or pHAGE dCas9-KRAB-MeCP2, together with helper plasmids, psPAX, and pMD2.G. After 12 h, cells were washed twice with PBS and a fresh medium was added. Medium-containing virus was collected 48 or 72 h after transfection, and filtered with 0.45 μm filters (Millipore). Stable cell lines were generated by infecting HCT116 with lentivirus expressing dCas9-KRAB-MeCP2 and sgRNAs. Cells were then screened with puromycin (1 μg/ml, Amresco) and hygromycin (200 μg/ml, Roche) for 48 h, and examined by western blot and RT-qPCR.
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