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A1r si confocal laser

Manufactured by Nikon

The Nikon A1R Si confocal laser is a high-performance microscope system designed for advanced imaging applications. It features a resonant scanner that enables rapid and high-resolution image acquisition. The system is equipped with a sensitive and low-noise detector, allowing for detailed analysis of samples at the cellular and subcellular level.

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5 protocols using a1r si confocal laser

1

Quantifying Neuronal Activity via Immunostaining

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Images were obtained from one set of brain sections (1/6th of the brain) for each immunostaining. For single stainings (c-Fos or GFP), brain regions of interest were identified at various Bregma coordinates. Images were acquired bilaterally with an epifluorescence microscope (Nikon) using a 10× objective. High-resolution reconstruction was achieved by combining multiple images with overlapping fields of view (NIS Elements software). Quantifications were performed manually using an image analysis software (ImageJ 1.49v, NIH), taking into account cells with immunofluorescence above background. For dual immunostainings (PV co-labeled with tdTomato, GFP co-labeled with mCherry, c-Fos co-labeled with SST), z stacks images were acquired bilaterally with a Nikon A1R Si confocal laser, a TiE inverted research microscope using a 20× objective. Images (1024 resolution) were acquired as 14 μM z stacks with a step size of 2 μM. For c-Fos intensity in SST cells (Figure S7), we measured c-Fos immunoreactivity in SST cells and expressed the data as a percentage of background in the same field of view. All analyses were performed by an investigator blinded to treatment and/or genotype.
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2

Multimodal Brain Imaging Analysis

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Images were obtained from one set of brain sections (1/6th of the brain) for each immunostaining, except for Rabies tracing analysis which was performed on the whole brain. For single stainings (c-Fos, tdTomato, GFP, CB, SST, CR, PV, NPY, Chat,), brain regions of interest were identified at various Bregma coordinates. Images were acquired bilaterally with an epifluorescence microscope (Nikon) using a 10x objective. High-resolution reconstruction was achieved by combining multiple images with overlapping fields of view (NIS Elements software). Quantifications were performed manually using an image analysis software (ImageJ 1.49v, NIH), taking into account cells with immunofluorescence above background. For dual immunostainings, z-stacks images were acquired bilaterally with a Nikon A1R Si confocal laser, a TiE inverted research microscope using a 20x objective. Images (1024 resolution) were acquired as 14 μM z-stacks with a step size of 2 μM. For c-Fos intensity in SST cells (Supplementary Fig. 9l-n), we measured c-Fos immunoreactivity in SST cells and expressed the data as a percentage of background in the same field of view. All analyses were performed by an investigator blinded to treatment and/or genotype.
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3

Multimodal Brain Imaging Analysis

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Images were obtained from one set of brain sections (1/6th of the brain) for each immunostaining, except for Rabies tracing analysis which was performed on the whole brain. For single stainings (c-Fos, tdTomato, GFP, CB, SST, CR, PV, NPY, Chat,), brain regions of interest were identified at various Bregma coordinates. Images were acquired bilaterally with an epifluorescence microscope (Nikon) using a 10x objective. High-resolution reconstruction was achieved by combining multiple images with overlapping fields of view (NIS Elements software). Quantifications were performed manually using an image analysis software (ImageJ 1.49v, NIH), taking into account cells with immunofluorescence above background. For dual immunostainings, z-stacks images were acquired bilaterally with a Nikon A1R Si confocal laser, a TiE inverted research microscope using a 20x objective. Images (1024 resolution) were acquired as 14 μM z-stacks with a step size of 2 μM. For c-Fos intensity in SST cells (Supplementary Fig. 9l-n), we measured c-Fos immunoreactivity in SST cells and expressed the data as a percentage of background in the same field of view. All analyses were performed by an investigator blinded to treatment and/or genotype.
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4

Quantifying Neuronal Activity and Coexpression

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Images were obtained from one set of brain sections (1/6th of the brain) for each immunostaining. For single stainings (DCX, c-Fos), brain regions of interest were identified at various Bregma coordinates. Images were acquired bilaterally with an epifluorescence microscope (Nikon) using a 10x objective. Quantifications were performed manually using an image analysis software (ImageJ 1.49v, NIH), taking into account cells with immunofluorescence above background. For dual immunostainings (c-Fos co-labeled with SST), z-stacks images were acquired bilaterally with a Nikon A1R Si confocal laser, a TiE inverted research microscope using a 20x objective. Images (1024 resolution) were acquired as 14 μM z-stacks with a step size of 2 μM. For c-Fos intensity in SST-expressing cells, we measured c-Fos immunoreactivity in SST cells and expressed the data as a percentage of background in the same field of view. All analyses were performed by an investigator blinded to treatment and/or genotype.
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5

Quantifying Neuronal Activity via Immunostaining

Check if the same lab product or an alternative is used in the 5 most similar protocols
Images were obtained from one set of brain sections (1/6th of the brain) for each immunostaining. For single stainings (c-Fos or GFP), brain regions of interest were identified at various Bregma coordinates. Images were acquired bilaterally with an epifluorescence microscope (Nikon) using a 10× objective. High-resolution reconstruction was achieved by combining multiple images with overlapping fields of view (NIS Elements software). Quantifications were performed manually using an image analysis software (ImageJ 1.49v, NIH), taking into account cells with immunofluorescence above background. For dual immunostainings (PV co-labeled with tdTomato, GFP co-labeled with mCherry, c-Fos co-labeled with SST), z stacks images were acquired bilaterally with a Nikon A1R Si confocal laser, a TiE inverted research microscope using a 20× objective. Images (1024 resolution) were acquired as 14 μM z stacks with a step size of 2 μM. For c-Fos intensity in SST cells (Figure S7), we measured c-Fos immunoreactivity in SST cells and expressed the data as a percentage of background in the same field of view. All analyses were performed by an investigator blinded to treatment and/or genotype.
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