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7 protocols using heat inactivated human ab serum

1

HBsAg-specific T cell proliferation assay

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HBsAg-specific proliferation assays were performed using the
subject’s fresh blood as noted for the in vitro effects
of THC above, except that no exogenous THC was added. Culture medium contained
RPMI 1640 supplemented with glutamine, 10% heat-inactivated human AB
serum (Omega Scientific, Tarzana, CA), 10 mM Hepes buffer, and
antibiotic-antimycotic mixture (Mediatech).
For intracellular cytokine analysis, fresh purified CD3+ T cells
were stimulated in vitro for 7 days with autologous
HBsAg-pulsed DC (1:20 DC:T cell ratio). T cells were recovered and re-stimulated
for 5 hours with either HBsAg-pulsed DC or non-antigen-pulsed DC (1:10 DC:T cell
ratio) in combination with anti-CD28 mAb (3 μg/ml). Brefeldin A (10
μg/ml; Sigma) was added during the last 4 hours. T cells stimulated with
Phorbol 12-myristate 13-acetate (PMA; 25 ng/ml) and Calcium Ionophore A23187
(750 ng/ml; both from Sigma) served as positive controls. After stimulation,
cells were recovered, fixed, cryopreserved, and on the day of FACS analysis were
treated with BD Bioscience lysing and permeabilizing reagents followed by
staining with mAb (anti-CD69, IL-10, IFN-γ and TNF-α; BD
Biosciences). A minimum of 100,000 gated T cells were acquired to determine the
frequency of responder subsets.
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2

Isolation and Expansion of Tumor-Infiltrating Lymphocytes

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TIL were expanded as previously described (14 (link)). Primary bladder tumors or lymph node metastases were minced into ~1–3 mm3 fragments and plated in TIL media consisting of RPMI 1640, 2.05 mM L–glutamine (HyClone, Thermo Fisher Scientific, Waltham, MA), 10% heat-inactivated human AB serum (Omega Scientific, Tarzana, CA), 55 μM 2-mercaptoethanol (Invitrogen), 50 μg/ml gentamicin (Invitrogen), 100 I.U./ml penicillin, 100 μg/ml streptomycin, and 10 mM HEPES Buffer (Mediatech, Manassas, VA) in 24- or 48-well plates with 6000 I.U./ml rhIL-2 (Prometheus). Some cultures were supplemented with 1 ug/ml anti-CD137 agonistic antibody (Urelumab, BMS-663513). All cultures were expanded for 4 weeks and confluent wells were split into additional wells. TIL from each independent fragment was counted. Remaining tumor material was mechanically and enzymatically digested using media containing 2% Collagenase Type IV and a GentleMACS Dissociator (Miltenyi, 130–093-235). Cells were counted by trypan blue exclusion and subjected to subsequent analysis or cryopreserved as functional assay targets. Positive TIL growth was defined as confluency and expansion of the primary well into 2 wells.
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3

Chordoma Cell Lines and haNK Cells Protocol

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The chordoma cell lines JHC7 and UM-Chor1 were obtained from the Chordoma Foundation (Durham, NC). The chordoma cell lines U-CH2 (ATCC® CRL-3218 ™) and MUG-Chor1 (ATCC® CRL-3219 ™) were obtained from American Type Culture Collection (Manassas, VA). All cell lines were passaged for fewer than 6 months and were maintained as previously described 11 . haNK cells were provided through a Cooperative Research and Development Agreement (CRADA) between the NCI and NantBioScience (Culver City, CA). haNK cells were cultured in phenol-red free and gentamycin-free X-Vivo-10 medium (Lonza, Walkersville, MD) supplemented with 5% heat-inactivated human AB serum (Omega Scientific, Tarzana, CA) at a concentration of 5×105/ml. haNK cells were irradiated with 10 Gy 24 h before all experiments. Peripheral blood mononuclear cells (PBMCs) from healthy volunteer donors were obtained from the NIH Clinical Center Blood Bank (NCT00001846).
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4

High-affinity NK Cell Protocol

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High-affinity NK (haNK) cells are an NK cell line, NK-92, which has been engineered to express IL-2 and the high-affinity valine (V) CD16 allele as previously described [5 (link)–7 (link)]. haNK cells were supplied by NantBioScience (Culver City, CA) through a Cooperative Research and Development Agreement (CRADA) with the National Cancer Institute (NCI) and cultured in X-Vivo-10 medium (Lonza, Walkersville, MD) supplemented with 5% heat-inactivated human AB serum (Omega Scientific, Tarzana, CA) at a concentration of 5 × 105 cells/ml.
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5

Rapid Expansion of Pancreatic TILs

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In a T25 flask, 1.43 × 105 pancreatic TIL were stimulated with 30 ng/mL human anti-CD3 (OKT3, Ortho Pharmaceutical, Raritan, NJ) in the presence of 2.9 × 107 irradiated (5000 rad) allogenic PBMC feeder cells. TIL were cultured in REP Media I comprised of RPMI 1640, 2.05 mM L–glutamine (HyClone, Thermo Fisher Scientific), 10 % heat-inactivated human AB serum (Omega Scientific), 55 μM 2-mercaptoethanol (Invitrogen), and 10 mM HEPES Buffer (Mediatech). On day 5, 70 % of the media was replaced with REP Media II comprised of a 1:1 (v:v) mixture of REP Media I and AIM V (Invitrogen). Media was supplemented with 6000 I.U./mL rhIL-2 on days 2 and 5 of the 8 day REP. This protocol was also implemented in T75 flasks at exactly triple the aforementioned cell counts and reagents.
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6

Expansion of Pancreatic Tumor-Infiltrating Lymphocytes

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Pancreatic tumors were minced into ~1 mm3 fragments, placed in 24 well plates with 2 mL of TIL media containing IL-2, and pancreatic TIL were allowed to extravasate from the tissue. If available, excess tissue was physically and enzymatically digested as described below. Alternatively, 48 well plates were used following the same procedure, using 1 mL of TIL media and IL-2. TIL were expanded in vitro for 3–6 weeks in 6000 I.U./mL IL-2 (Proleukin, Novartis, Emeryville, CA) per mL of complete TIL media (TIL-CM) consisting of RPMI 1640, 2.05 mM L–glutamine (HyClone, Thermo Fisher Scientific, Waltham, MA), 10 % heat-inactivated human AB serum (Omega Scientific, Tarzana, CA), 55 μM 2-mercaptoethanol (Invitrogen), 50 μg/mL gentamicin (Invitogen), 100 I.U./mL penicillin, 100 μg/mL streptomycin, and 10 mM HEPES Buffer (Mediatech, Manassas, VA) in 24 or 48 well plates. Half of the media was replaced every 2 to 3 days or wells were split when 80 % confluent. For TIL generation in the presence of costimulatory antibodies, TIL were propagated as above with the addition of an antagonistic human PD-1 antibody (Nivolumab, 10 μg/mL) or with an agonistic human 4-1BB antibody (Urelumab, 10 μg/mL at initiation, followed by continued supplement with 1 μg/mL at each feeding or splitting as above) generously provided by Drs. Alan Korman and Maria Jure-Kunkel (Bristol Myers Squibb, Princeton, NJ).
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7

Derivation of Human Dendritic Cells

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Human dendritic cells were derived from peripheral blood mononuclear cells (PBMCs) isolated from de-identified, healthy donor leukopaks (New York Biologics, Southampton, NY), in accordance with UMMS-IRB protocol ID #H00004971. Mononuclear leukocytes were isolated by gradient centrifugation on Histopaque-1077 (Sigma-Aldrich, St. Louis, MO). CD14+ mononuclear cells were enriched via positive selection using anti-CD14 antibody MicroBead conjugates (Miltenyi, San Diego, CA), according to the manufacturer’s protocol. CD14+ cells were then plated at a density of 1 to 2 x 106 cells/ml in RPMI-1640 supplemented with 5% heat inactivated human AB+ serum (Omega Scientific, Tarzana, CA), 20 mM L-glutamine (ThermoFisher, Waltham, MA), 25 mM HEPES pH 7.2 (Sigma-Aldrich), 1 mM sodium pyruvate (ThermoFisher), and 1 x MEM non-essential amino acids (ThermoFisher). Differentiation of the CD14+ monocytes into dendritic cells (human DCs) was promoted by addition of recombinant human GM-CSF and human IL-4; cytokines were produced from HEK293 cells stably transduced with pAIP-hGMCSF-co or pAIP-hIL4-co, respectively, as previously described (Reinhard et al., 2014 (link)), with each cytokine supernatant added at a dilution of 1:100.
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