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Vybrant apoptosis assay kit 4

Manufactured by Thermo Fisher Scientific
Sourced in United States

The Vybrant Apoptosis Assay Kit #4 is a fluorescence-based assay designed to detect and measure apoptosis, a form of programmed cell death. The kit provides reagents for a quantitative analysis of apoptosis in cell populations.

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11 protocols using vybrant apoptosis assay kit 4

1

Evaluating Neuroprotective Effects of GA

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Cells were cultured in DMEM on 6-well plates for 24 h, followed by the addition of various concentrations (0, 0.3, 0.7, and 1 mM) of GA, and all assays were performed after a further incubation for 24 h. Cell viability was assessed using Cell counting kit-8 (Dojin, Kumamoto, Japan) according to the manufacturer’s instructions. Apoptosis was examined by fluorescent microscopy using Vybrant® Apoptosis Assay Kit #4 (Invitrogen Corporation, CA, USA), in which early apoptotic cells were detected with green fluorescent YO-PRO®-1. In medium analyses, an aliquot of medium was centrifuged (600 g, 5 min, 4 °C) followed by recentrifugation of the supernatants (21,000 g, 10 min, 4 °C), and the resulting supernatants were used. Aβ42, total tau protein, and p-tauT181 protein were examined by ELISA kits (for the tau protein, its phosphorylated form, and Aβ42, the kit was obtained from Invitrogen Corporation, CA, USA). Lactic acid concentrations were measured by Determiner-LA (Kyowa Medex, Tokyo, Japan). In ACAC experiments, cells were treated with ACAC 15 min before the addition of GA.
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2

Quantify Early-Stage Apoptosis by Flow Cytometry

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To quantify the proportion of early-stage apoptotic cells the commercial kit “Vybrant Apoptosis Assay Kit #4” with YO-PRO-1 and PI for Flow Cytometry (Invitrogen, Thermo Fisher Scientific, Waltham, MA, USA; catalog number: V13243) was used. The cells were stained according to the supplemented manufacturer protocol. After 24 hours post-radiation, cells were collected and washed in cold phosphate-buffered saline (PBS). A total of 1 μL of YO-PRO-1 stock solution and 1 μL of PI stock solution were added to each 1 mL containing 1 × 106 cells. Cells were incubated on ice for 20–30 min. Cells were analyzed by flow cytometry (BD FACSCalibur, Becton Dickinson, San Jose, CA, USA) using 488 nm excitation with green fluorescence emission for YO-PRO-1 (i.e., 530/30 bandpass) and red fluorescence emission for PI (i.e., 610/20 bandpass). A total of 50,000 events were acquired for each sample and analyzed with BD CellQuest Pro 5.1 software (Becton Dickinson, San Jose, CA, USA).
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3

Apoptosis Analysis of Compound 3 in NCI-H460 Cells

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The apoptotic potential of compound 3 was analyzed by Vybrant Apoptosis Assay Kit # 4 (Invitrogen, USA) according to manufacturer protocol. Briefly, 1 × 106 NCI-H460 cells were seeded in a 6-well plate (Corning, USA). After 24 h, cells were treated with compound 3 and further incubated for 48 h in a humidified CO2 incubator. After incubation, the cells were washed with PBS and dissociated using trypsin-EDTA. Cell pellet was collected by centrifugation and suspended in 1 mL PBS. One microliter (1 μL) of YO-PRO-1 stock solution (Component A) and PI stock solution (Component B) were added and incubated on ice for 30 min. FACSCalibur (Becton Dickinson, USA) was used to analyze the samples whereas, CellquestPro software was used to calculate the cells in their respective phase of apoptosis. Total of 10,000 events of each sample were recorded as one reading and all experiments were performed in triplicate.
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4

Rat Liver Hepatocyte Apoptosis Assay

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The liver samples of rats were harvested before blood collection. Briefly, liver tissues of equal sizes were taken from the same part of the left lobe of the rat livers and rapidly placed in a 1640 medium containing 5% fetal bovine serum (FBS). The liver tissues were moved from the medium onto a 300-mesh filter and ground gently to let the cells pass through the filter. Afterward, the cells were collected and washed with phosphate buffer saline (PBS). 2×106 cells were placed in the flow tube and washed with PBS. Then, 1 μL Annexin V YO-PRO-1 dye and 1 μL PI dye from Vybrant® Apoptosis Assay Kit #4 (Invitrogen, Carlsbad, CA, USA) were added to the flow tubes. The cells were static-cultured at 4 °C in the dark for 20 min and resuspended in PBS. Finally, the hepatocyte apoptosis rate was detected by flow cytometry-BD FACS Canto II Plus (BD Biosciences, San Jose, CA, USA).
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5

Apoptosis Assay of Oral Cancer Cells

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Oral cancer (CAL-27) cells (5 × 105) were seeded in a 6-well plate and incubated for 24 h in presence of 5% CO2. After incubation compound 1 was added at IC50 and IC70 concentration and further incubated for 48 h. Following incubation cells were harvested by using trypsin (0.05%) and pallet out after washing three times at 400×g for 5 min to remove media and trypsin. Cell pallets were suspended in 1 mL PBS and stained with Vybrant Apoptosis Assay kit # 4 (Invitrogen, USA) containing YO-PRO-1 and Propidium Iodide (PI) dye according to manufacturer protocol. Briefly, cells were incubated with 1 μL YO-PRO-1 stock solution (Component A) and 1 μL PI stock solution (Component B) for 30 min on ice. Later, cells were analyzed on FACSCalibur (Becton–Dickinson, USA). YO-PRO-1 and PI were excited at 488 nm, and fluorescence was measured at 530 and 620 nm, respectively. A total of 10,000 events were acquired from each sample. The percentages of live, apoptotic and dead cells were determined using CellquestPro software.
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6

Apoptotic-like Changes in Red Deer Sperm

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The percentages of red deer spermatozoa with viable plasma membranes and apoptotic-like changes in plasma membranes were determined with the Vybrant Apoptosis Assay Kit #4 (Molecular Probes Inc., Eugene, OR, USA) according to a previously described method [22 (link)] with some modifications. First, to visualize all cells, 1 µL of JC-1 was added to 200 µL of the sperm suspension (10 × 106 sperm/mL) and incubated for 10 min at 37 °C. Then, 2 μL of YO-PRO-1 solution (100 μM) and 2 μL of PI (2 μM) were added to the stained sample and incubated for 5 min at 37 °C. After incubation, stained sperm cells were examined under a fluorescence microscope (Olympus, model BX41, Tokyo, Japan) at 600× magnification. A minimum of 200 cells per slide were examined in each aliquot. Four populations of spermatozoa were identified: with an unstained head, but with a visible mid-piece (viable sperm without apoptotic-like changes; YO-PRO-1/PI); with a green head (sperm with apoptotic-like changes in the plasma membrane; YO-PRO-1+/PI), with a red and green head (moribund/dying sperm cells with dual fluorescence; YO-PRO-1+/PI+), and sperm with a red head (dead/necrotic cells; YO-PRO-1/PI+).
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7

Apoptosis Induction by Eribulin and Radiation

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Induction of apoptotic caspases was evaluated using the Caspase-Glo 3/7 assay (Promega, Madison, WI). Cell lines were plated at 4000/ well in a 96-well plate. Eribulin was added 24 h later. The Caspase-Glo 3/7 reagents were added at 24 h post-treatment. The plates were read on a luminometer (Synergy2, Biotek, Winooski VT). The % apoptotic cells was evaluated by FACS using the Vybrant Apoptosis Assay Kit 4 (Molecular Probes, Eugene, OR). Briefly, 5 × 105 cells were incubated with eribulin alone, radiation alone or the combination for 48 h. The cells were harvested, stained with the DNA binding dyes YOPRO and propidium iodine according to manufacturer's directions and analyzed by FACS (Beckman FC500).
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8

Apoptosis Induction by Eribulin and Radiation

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Induction of apoptotic caspases was evaluated using the Caspase-Glo 3/7 assay (Promega, Madison, WI). Cell lines were plated at 4000/ well in a 96-well plate. Eribulin was added 24 h later. The Caspase-Glo 3/7 reagents were added at 24 h post-treatment. The plates were read on a luminometer (Synergy2, Biotek, Winooski VT). The % apoptotic cells was evaluated by FACS using the Vybrant Apoptosis Assay Kit 4 (Molecular Probes, Eugene, OR). Briefly, 5 × 105 cells were incubated with eribulin alone, radiation alone or the combination for 48 h. The cells were harvested, stained with the DNA binding dyes YOPRO and propidium iodine according to manufacturer's directions and analyzed by FACS (Beckman FC500).
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9

Evaluating Apoptosis in Leukemic Cells

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The leukemic cells were incubated in culture medium, with or without (the control) drug treatment. The fractions of viable and apoptotic cells following 48 h of exposure were determined by Vybrant Apoptosis assay kit #4 (Molecular Probes; Thermo Fisher Scientific, Inc., Waltham, MA, USA), as described previously (15 (link)).
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10

Assessing Sperm Viability and Apoptosis

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The percentages of viable and plasma membrane apoptotic-like changes in spermatozoa were assessed using the Vybrant Apoptosis Assay Kit #4 (Molecular Probes, Inc., Eugene, USA), according to a previously described method [37 (link)]. Following incubation of sperm suspension (4 × 106 spermatozoa/mL) in YO-PRO-1 (100 µM) and PI (2 μM) solutions for 15 min at 37 °C, aliquots of the stained sperm cells were examined at 600× magnification under a fluorescence microscope (Olympus CH 30). A minimum of 100 cells per slide were examined in each aliquot, and three sub-populations were identified: viable spermatozoa categorized as negative for both YO-PRO-1 and PI (YO-PRO-1/PI), plasma membrane apoptotic-like changes in spermatozoa (moribund spermatozoa) were categorized as positive for YO-PRO-1+ but negative for PI (YO-PRO-1+/PI), and dead spermatozoa, which were positive for both YO-PRO-1 and PI (YO-PRO-1+/PI+).
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