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163 protocols using ab7090

1

Western Blot Analysis of LX-2 Cell Protein

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LX-2 cells were collected after transfection and fully lysed using lysis solution to obtain total protein. After gel electrophoresis and nitrocellulose membrane blotting, the membranes were blocked with TBST containing 5% skim milk powder for 2 h. Thereafter, the membranes were transferred to dilutions containing GAPDH antibody (ab9485, 1:1000, Abcam, Shanghai, China), α-SMA antibody (ab5694, 1:1000, Abcam), Col1α1 antibody (ab166606, 1:1000, Abcam), and cleaved-Caspase3 antibody (ab32042, 1:1000, Abcam) and incubated at 4°C overnight. The membranes were washed thrice with TBST (15 min each) and incubated with the secondary antibody (ab7090, 1:1000, Abcam) at room temperature for 2 h. Finally, the membranes were developed using ECL chemiluminescent reagent.
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2

Western Blot Protein Expression Analysis

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Protein expressions were determined using Western blot assay [33 (link)]. Total protein was extracted using RIPA cell lysate buffer containing a protease inhibitor cocktail. The protein concentration was then measured using the BCA method. The proteins were separated by SDS-PAGE gel electrophoresis and transferred to PVDF membranes. The membranes were then blocked with 5% BSA at room temperature for 50 min to eliminate nonspecific binding of primary and secondary antibodies. Primary antibody (cleaved-Caspase3 antibody, ab32042, 1:1000, Abcam; GAPDH antibody, ab9485, 1:1000, Abcam; PCNA antibody, ab18197, 1:1000, Abcam; CCND2 antibody, ab207604, 1:1000, Abcam;) was then added to the PVDF membrane and incubated overnight at 4°C. The next day, the membranes were probed with the corresponding HRP-labeled secondary antibody (ab7090, 1:1000, Abcam) by incubation at room temperature for 2 h. ECL chromogenic solution A and B were mixed, added dropwise to the position of the target band on the membrane, and photographed using ImageJ software.
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Protein Extraction and Western Blot Analysis

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Extraction of total protein was conducted utilizing QIAzol™ lysis reagent (Qiagen, CA). 40 μg protein was subjected to SDS–PAGE as well as transferred onto PVDF membranes (Millipore, MA). Thereafter, the blots were blocked with 5% blotting grade milk lasting 1 h and were incubated with a primary antibody against ERCC6 (#24291-1-AP; 1:500; Proteintech, Wuhan, China), GAPDH (#10494-1-AP; 1:10000; Proteintech), Bax (#60267-1-Ig; 1:5000; Proteintech), cleaved caspase-3 (#19677-1-AP; 1:500; Proteintech), Bcl-2 (#26593-1-AP; 1:1000; Proteintech), p21 (#10355-1-AP; 1:1000; Proteintech), p27 (#25614-1-AP; 1:1000; Proteintech), 4-HNE (#ab46545; 1:3000; Abcam, United States), and Nrf2 (#16396-1-AP; 1:500; Proteintech) or Keap1 (#10503-2-AP; 1:2000; Proteintech) overnight at 4°C. The following day, the blots were incubated in horseradish peroxidase-conjugated goat anti-rabbit (#ab7090; 1:5000; Abcam) or anti-mouse secondary antibody (#ab7063; 1:5000; Abcam) lasting 1 h at room temperature. Thereafter, the blots were developed with enhanced chemiluminescence. The gray value was quantified via ImageJ software.
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4

Immunoblotting Analysis of Hedgehog Signaling in HCC

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Immunoblotting was exercised to examine the expression of Hh signaling pathway-related markers in HCC cells according to standard protocols as described previously.18 (link) Protein was harvested using radio immunoprecipitation assay lysis buffer, and a bicinchoninic acid assay was applied to determine the protein concentration. Next, we separated equal amount of protein using 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred the protein to a polyvinylidene difluoride membrane. After blocking with 1.5% skimmed milk for 1 h at room temperature, membranes were incubated with the primary antibodies at 4°C overnight and with horseradish peroxidase-conjugated secondary antibodies. Membranes were developed using a chemiluminescent substrate. The antibodies were used as follows: Gli1 (1:200, ab49314, Abcam), Gli2 antibodies (1:500, ab26056) and Gli3 antibodies (1:500, ab6050) and the secondary antibodies (1:50,000, ab7090).
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5

Western Blot Analysis of IL-7, PI3K, and AKT Signaling

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The A549/DDP cell line or tumor tissues were rinsed with PBS and lysed in a RIPA buffer with protease inhibitors and phosphatase inhibitors (Roche Applied Science, Indianapolis, IN, USA) for Western blots. The proteins were segregated from tumor samples or cell lines. Procedures for immunoblotting are described elsewhere [18 (link)]. Primary antibodies against IL-7 (Abcam, ab9732, 1 : 3000 dilution), IL-7R (Abcam, ab180521, 1 : 1000 dilution), PI3K (CST, 13666, 1 : 1000 dilution), p-PI3K p85 alpha (phospho Y607) (Abcam, ab182651, 1 : 1000 dilution), AKT (CST, 4691, 1 : 1000 dilution), p-AKT (CST, 4691, 1 : 2000 dilution), ABCG2 (Abcam, ab130244, 1 : 1000 dilution), and GAPDH (Abcam, ab181602, 1 : 10000 dilution), as well as HRP-conjugated goat anti-rabbit secondary antibodies (Abcam, ab7090, 1 : 10000 dilution) and HRP-conjugated goat anti-mouse secondary antibodies (Abcam, ab47827, 1 : 5000 dilution), were procured from Abcam (Cambridge, MA, USA) or Cell Signaling Technology (Denver, MA).
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6

Protein Extraction and Western Blot Analysis

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We utilized cell lysis buffer (Beyotime), containing 1% PMSF (Amresco), to cleave proteins for 30 minutes on ice. Then, we centrifuged the lysed cells at 12 000 g for 10 minutes at 4°C to extract the supernatant for protein quantification. We utilized the BCA Protein Assay Kit (Thermo Fisher Scientific, Inc.) to quantify protein concentration. The obtained supernatant was then boiled for 10 minutes by adding 5X SDS. Protein (50 μg) was added to the prepared 12% SDS‐PAGE gels for electrophoretic separation and transferred to 0.45 µm PVDF membranes (Amersham Hybond, GE Healthcare). We then utilized 1% albumin from bovine serum (Amresco) to block the PVDF membranes for 2 hours. Then, the membranes were incubated overnight with diluted xCT (1:1000, ab37185; Abcam) and β‐actin (1:1000, ab179467; Abcam) antibodies on a shaker at 4°C. We washed the membranes with TBS‐T (0.1% Tween‐20) at room temperature three times for 10 minutes. The goat anti‐rabbit IgG H&L (HRP) (1:2000, ab7090; Abcam) for 1 hour was utilized to incubate the membranes. After washed, the membranes were exposed to enhanced chemiluminescence substrate detection solution (Lulong Biotech) subsequently.
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7

Western Blot Analysis of Protein Expression

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Total proteins were extracted by using RIPA (Thermo Fisher Scientific), which were then transferred to a polyvinylidene fluoride (PVDF) membrane (Millipore, Temecula, MA, USA). The membranes were subsequently incubated overnight with antibodies against BCL11A (Abcam, Cambridge, MA, UK; 1:1000, ab19489), DNMT1 (Abcam, 1:1000, ab188453), CD44 (Abcam, 1:1000, ab189524), ALDH (Abcam, 1:1000, ab133306) and β-actin antibodies (Abcam, 1:1000, ab8226). After washed with PBST, membranes were then incubated with the corresponding secondary antibody (Abcam, 1:10000, ab7090) for 60 min. Protein bands were analyzed by an ECL detection kit (Beyotime).
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8

BCA Assay and Western Blot Analysis

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The protein concentration was measured using a bicinchoninic acid (BCA) assay (#23225; Pierce, USA) according to the manufacturer’s instructions. The primary antibodies used in this study are as followed: anti-KDM5B (1:500, Cell Signaling Technology, #15327), anti-H3K4me3 (1:1000, Cell Signaling Technology, #9751), anti-H3 (1:1000, Cell Signaling Technology, #4499), anti-CCNE1 (1:1000, Cell Signaling Technology, #20808), anti-CCNE2 (1:1000, ProteinTech, 11935-1-AP), anti-CDK2 (1:1000, ProteinTech, 10122-1-AP), anti-FLAG (1:1000, Cell Signaling Technology, #8146), anti-FBXW7 (1:1000, Abcam, ab109617), anti-FLI1 (1:1000, Abcam, ab133485), and β-actin (1:5000, Cell Signaling Technology, #4970). The secondary antibodies are goat anti‐rabbit immunoglobulin G (1:2000, Abcam, ab7090) and goat anti‐mouse immunoglobulin G (1:2000, Abcam, ab97040). The unprocessed western blot images were shown in Supplementary Fig. S2.
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9

Western Blot Analysis of IGF1R

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After CDDP treatment or transfection with miR-378a-3p mimics, NC mimics, pcDNA-IGF1R, and pcDNA, cells were digested and collected using 0.25% trypsin, washed twice using pre-chilled 1× PBS ( phosphate buffer saline), centrifuged, and supernatants were discarded. The total cellular protein was extracted and then separated by SDS-PAGE electrophoresis and transferred to the PVDF membrane. The cells were closed with 4% skim milk for 1 h, incubated overnight at 4°C with primary antibody dilution of IGF1R (ab182408, 1:1,500, Abcam, Cambridge, MA, USA), washed 3 times with 1× phosphate buffered saline Twen-20, and then incubated for 1 h using secondary antibody dilution (ab7090, 1:2,000, Abcam), and developed by adding ECL developer [14 (link)].
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10

Protein Expression Analysis in Retina and Cells

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The retina of mice and BV-2 or HRECs were collected and homogenized with lysis buffer, followed which centrifugation (1600 × g, 15 min) was performed at 4°C. Protein concentration was quantified in supernatant fluid by bicinchoninic acid assay (Beyotime Institute of Biotechnology, Haimen, China). Separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE), the proteins were transferred to the PVDF membranes (GE Healthcare Europe GmbH, Freiburg, Germany). Proteins were blocked with 5% nonfat milk for 1 h and incubated with primary antibodies (p-p65: ab76302; t-p65: ab32536; occludin: ab216327; claudin-1: ab180158; ZO-1: ab216880; VEGF: ab214424; CD31: ab182981; GAPDH: ab8245. Abcam, England. p-IκB: #2859, t-IκB: #9242, Iba-1: #17,198, Cell Signaling Technology, USA). Subsequently, HRP-conjugated secondary antibody (ab7090, abcam, England) was used to incubate the membranes for 1 h at 37°C. Protein bands were visualized by enhanced chemiluminescence reagent (Millipore Corp., Bedford, MA).
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