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7 protocols using dabigatran

1

Simultaneous DOAC Quantification by HPLC-MS/MS

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A 500 µL of every blood sample taken in the acute setting will be frozen and multiple samples will be analyzed in by HPLC-MS/MS using a 1260 Infinity Quaternary LC System (Agilent Technologies, Santa Clara, California, United States), equipped with a Phenomenex Luna Pentafluorophenyl Column (length: 150 mm, internal diameter: 2 mm, particle size: 5 µm), and a 3200 Q Trap (AB Sciex Germany GmbH, Darmstadt, Germany) mass spectrometer.
52 (link)
Calibration reagents encompass apixaban, edoxaban, and rivaroxaban supplied by Cayman Chemical Company (Ann Arbor, United States), dabigatran etexilate supplied by Sigma Aldrich (St. Louis, United States), and dabigatran supplied by Biosynth/Carbosynth (Thal, Switzerland). apixaban-13C-d3 (Cayman Chemical Company, Ann Arbor, United States) is used as the internal standard. The HPLC-MS/MS method for the simultaneous determination of DOACs that will be used this study has recently been developed and validated by members of our group.
52 (link)
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2

Reconstitution of Anticoagulant Drugs

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Warfarin (A2250-10G, Sigma-Aldrich, Castle Hill, NSW, Australia), Enoxaparin sodium (E0180000, Sigma-Aldrich, Castle Hill, NSW, Australia), Edoxaban (E555520, Sapphire Bioscience, Redfern, NSW, Australia), Apixaban (15427, Sapphire Bioscience, Redfern, NSW, Australia), Dabigatran (ML2370-25MG, Sigma-Aldrich, Castle Hill, NSW, Australia), Rivaroxaban R-enantiomer (A14979, Sapphire Bioscience, Redfern, NSW, Australia), and 5-FU (F6627-5G, Sigma-Aldrich, Castle Hill, NSW, Australia), were reconstituted in acetone, filtered water, methanol, Dimethyl Sulfoxide (DMSO), HCl, DMSO, and DMSO, respectively.
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3

Comparative Growth of OSCC and Glioma Cell Lines

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The human OSCC cell lines PECA/PJ34, PECA/PJ41 and SCC9 were purchased from LGC Standards (Strasbourg, France) and compared to three human glioma cell lines (A172, U118MG and SW1088). Cell lines were authenticated using short tandem repeat profiling (LGC Standards, Strasbourg, France) and cell cultures were routinely checked for mycoplasma contamination. All cell lines were cultured in Dulbecco Modified Eagle’s Medium (DMEM, purchased from Sigma Aldrich (Saint-Quentin Falavier, France) supplemented with 5% fetal calf serum, 1% added glutamine and antibiotics (all from Sigma Aldrich). Thrombin and dabigatran were purchased from Sigma Aldrich. Human Interferon-γ was purchased from R&D Systems (Minneapolis, MI, USA). The growth of cancer cells was monitored after one rinse with PBS, a step of fixation with methanol and staining with crystal violet (Sigma Aldrich, Saint Quentin Falavier, France). After a wash step, the crystal violet dye was solubilized and measured by absorbance at 570 nm. The results were expressed as % of control.
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4

Antiplatelet and Anticoagulant Protocol

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Cangrelor and dabigatran were purchased from Sigma-Aldrich (St. Louis, MO), and prepared as 5 mg/mL stock solutions in water and 0.1 N HCl, respectively. The final working solutions were diluted in normal saline. Cangrelor was infused as an initial bolus dose of 0.3 mg/kg followed by 0.1 mg/kg/min maintenance with a syringe pump via a jugular venous catheter14 (link). dabigatran was injected into the jugular vein at a bolus dose starting at 15 μg/kg29 (link) and increasing to 150 μg/kg, 20 min before puncture.
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5

HUVEC Endothelial Cell Culture Protocol

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Human umbilical vascular endothelial cells (HUVECs), trypsin with EDTA, trypsin neutralizing solution, endothelial cell growth medium-2 (EGM-2) with hydrocortisone, hFGF-B, vascular endothelial growth factor (VEGF), R3-IGF-1, ascorbic acid, hEGF, GA-1000, heparin and fetal bovine serum (FBS), were purchased in Lonza (Basel, Switzerland). Endonuclease III (Nth) and human 8-oxoguanine DNA glycosylase (hOGG1) were acquired in New England Biolabs (Ipswich, MA, USA). 2′,7′-dichlorodihydrofluorescein diacetate (H2DCFDA) was purchased from Invitrogen (Waltham, Massachusetts, USA). Low melting point (LMP), normal melting point (NMP) agarose, 4′,6-diamidino-2-phenylindole (DAPI), dabigatran, rivaroxaban and 25-hydroxycholesterol (25-OHC) were bought from Sigma-Aldrich (St. Louis, MO, USA) while other chemicals were purchased from Carl Roth GmbH + Co. KG (Karlsruhe, Germany) and POCh (Gliwice, Poland) and were of analytical grade.
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6

Thrombin-induced cell response regulation

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Dabigatran (1 nM; Selleck Chemicals) or thrombin (5 U/ml; Sigma-Aldrich; Merck KGaA) with/without Dabigatran were used to treat the induced cells, or the induced cells were treated with thrombin (5 U/ml) with/without 3-MA (Sigma-Aldrich; Merck KGaA).
The H/R induced cells were treated with thrombin (5 U/ml) and transfected with small interfering (si)-SPRED2 or si-negative control (NC; 5 nM; all synthesized and purchased from Shanghai GenePharma Co., Ltd.) using Lipofectamine® 2000 (Invitrogen; Thermo Fisher Scientific, Inc.), according to the manufacturer's instructions. The Lipofectamine® 2000-si-SPRED2 complex was formed by mixing for 20 min at room temperature. Then, Lipofectamine® 2000-si-SPRED2 complex was added to the cells and the cells were cultured in serum-free Opti-MEM (Gibco; Thermo Fisher Scientific, Inc.) at 37˚C for 4 h, followed by incubation in serum-containing medium (DMEM; Gibco; Thermo Fisher Scientific, Inc.) at 37˚C for 72 h. After 48 h, the transfection efficiency was evaluated by reverse transcription-quantitative (RT-qPCR). The sequences were as follows: si-SPRED2, 5'-AUAGCAUUCCAAUACAACCAG-3' and si-NC, 5'-AAUUGACCCAACAAUCACAU-3'.
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7

Serine Protease Activity Quantification

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Serine protease activity was quantified in colonic washes from rats with BOC-val-pro-arg-amino-4-methylcoumarin [VPR-AMC] hydrochloride [200 μM, Sigma-Aldrich B9395] as substrate in 50 mM Tris, 10 mM CaCl2, 150 mM NaCl, pH = 8.3. Initial velocity was calculated by the change in fluorescence [excitation: 355 nm, emission: 460 nm], measured over 15 min at 37°C using a Varioskan Flash microplate reader [Thermo Fisher Scientific]. Thrombin specific proteolytic activity was accounted for in the VPR-AMC assay, by pre-incubating samples with dabigatran [1 µM, Sigma] for 10 min at 37°C before starting enzymatic reaction.
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