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68 protocols using fcap array software version 3

1

Multiplex Cytokine Profiling of Spleen Cells

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IL-2, IL-4, IL-6, IL-10, IL-17A, IFN-γ, and TNF-α were quantified in cultured supernatants of spleen cells by a flow cytometer, using a Multiplex CBA kit (BD Cytometric Bead Array Th1/Th2/Th17, San Diego, USA) according to the manufacturer’s instructions. Cells were acquired with a FACSCalibur cytometer and analyzed with FCAP Array TM Software Version 3.0 (BD). IL-9 determination was assayed with CBA flex set (BD Cytometric Flex Set Th9, San Diego, USA).
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2

Multiplex Cytokine Quantification

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IL-2, IL-4, IL-6, IL-10, IL-17A, IFN-γ and TNF-α were quantified in culture supernatants of spleen cells by flow cytometry by using Multiplex CBA kit (BD Cytometric Bead Array Th1/Th2/Th17, San Diego, USA) according to manufacturer’s instructions. Cells were acquired in FACSCalibur cytometer and analyzed with FCAP Array TM Software Version 3.0 (BD).
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Cytokine Profile Analysis in Co-Culture Supernatants

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Supernatants from overnight co-culture experiments was collected and stored at minus 80 degrees Celsius until cytokines measurement determination for human IL-2, IL-4, IL-6, IL-10, TNF-α, IFN-γ, and IL-17A using the BDTM Cytometric Bead Array (CBA) Human Th1/Th2/Th17 Cytokines Kit (BD Biosciences), in accordance with the manufacturer’s instruction. Briefly, supernatants were incubated with beads- and PE- conjugated anti-cytokine antibodies. Each serial diluted of standard protein was also incubated with those antibodies. After 3 hours of incubation, beads were washed and acquired by FACS. Two hundred forty thousand beads per test were acquired, to capture at least 300 events per each cytokine bead. To make standard curves and measure cytokines level, data were analyzed using FCAP ArrayTM Software Version 3.0 (BD Biosciences). As a control, we measured the supernatant collected from ATCs only, or MV4-11, or patient’s tumor cells only.
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Quantification of Serum Immune Mediators

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Soluble serum immunological mediators (chemokine and cytokine) including CXCL8, CCL2, CXCL9, CXCL10, TNF, IFN-γ, IL-17A, IL-12p70, IL-10, IL-6, IL-4, IL-2 and IL-1β were quantified using arrays of cytometric beads (Human Chemokine, Human Inflammatory Cytokine and Human Cytokine Th1/Th2/Th17 BD™ kits, BD Biosciences, San Diego, CA, USA), according to the manufacturer’s instructions. Data was acquired using the FACSCanto II and analyzed using the FCAP-Array software version 3.0.1 (BD Biosciences, San Jose, CA, USA). Data were reported in picograms per milliliter (pg/mL) concentrations, according to the standard curves provided in the kits.
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5

Quantifying Pro- and Anti-Inflammatory Cytokines

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The plasma pro- and anti- inflammatory cytokines were quantified by human cytometric bead array (CBA) kits (BD Biosciences Pharmingen, San Jose, CA, USA) for IL-1β (interleukin-1 beta), IL-6, IL-8, IL-10, IL-12p70 and TNF (tumour necrosis factor), and by CBA Flex Set system (BD Biosciences Pharmingen, San Jose, CA, USA) for IL-2, IL-4, IL-5, IL-13, IL-17A and IFN-γ (interferon gamma). Standard curves for each cytokine were generated by using the reference cytokine concentrations supplied with the kits. All standards and plasma samples were acquired on Accuri™ C6 Plus personal flow cytometer (BD Biosciences). Data analysis was performed using the FCAP Array software version 3.0.1 (BD/Softflow, Pécs, Hungary) and the values were expressed in pg/mL.
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6

Cytokine Levels in Brain and Plasma

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Brain samples (right hemisphere) were prepared, and the supernatant was obtained as previously described [35 (link)] and used in the assays. The tissue and plasma levels of TNFα, IFNγ, and IL-6 were evaluated by using mouse cytometric bead array (CBA) cytokine kits according to the manufacturer's instructions (BD Biosciences, Brazil). Data analysis was performed on a FACSCalibur flow cytometer (BD Biosciences Immunocytometry Systems). Results were calculated in FCAP Array Software version 3.0.1 (BD Biosciences, Brazil) and expressed as picograms of cytokine per mg of tissue protein (pg/mg of protein) or picograms per milliliter of plasma (pg/ml).
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7

Cytokine Quantification in Transwell Cultures

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The presence of cell-secreted cytokines in co-culture supernatants was determined using BD™ Cytometric Bead Array (CBA; BD Biosciences, Heidelberg, Germany) and a fluorescence activated cell sorter (FACS; LSR II Fortessa, BD Biosciences). Aliquots of cell culture supernatant from both, apical and basolateral compartment of the Transwell® system, were collected before and after 6 and 24 h of inflammation with LPS (10 μg/mL). Experiments were performed in triplicates and supernatants were stored at −80 °C before analysis. Cytokine quantification was performed using CBA Human soluble Protein Flex Set for TNF-α and IL-8 in accordance with the manufacturer's protocol. Analysis was performed using FCAP Array™ Software Version 3.0.1 (BD Biosciences) and final cytokine concentration is represented in units of pg/mL.
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8

Multiplex Cytokine Profiling in Cell Culture

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The detection of soluble cytokines in cell culture supernatants was undertaken using mouse Th1/Th2/Th17 and mouse inflammation CBA kits (BD Biosciences) according to the manufacturer’s instructions with minor modifications, as previously described (20 (link)). Culture supernatants from triplicate wells of the splenocyte proliferation assays were pooled and frozen at −80°C until used. Samples were acquired on a BD LSR Fortessa flow cytometer (BD Biosciences) and the data were analyzed using FCAP Array software version 3.0.1 (BD Biosciences).
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9

Placental Inflammatory and Complement Profiling

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Interleukin (IL-) 1β, IL-6, IL-8, IL10, IL-12p70, and TNF-α were detected and quantified in placental plasma by CBA Human Inflammatory kit (BD Biosciences), according to the manufacturer’s protocol. Complement (C3a, C4a, and C5a) activation was evaluated in placental plasma through CBA Human Anaphylatoxin kit (BD Biosciences). Samples were analyzed in a two-laser BD FACSCalibur flow cytometer with CellQuest version 5.2 software (BD Biosciences) and concentrations computed using FCAP array software version 3.0.1 (BD Biosciences).
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10

Cytometric Bead Array Analysis of Mouse Sera

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The sera of mice were collected to measure the levels of interleukin-6 (IL-6), TNF and IL-10 using a Cytometric Bead Array (CBA) Mouse Inflammation Kit (BD Biosciences, San Jose, CA, USA) as recommended by the manufacturer. Samples were acquired in an Accuri™ C6 flow cytometer (BD Biosciences, San Jose, CA, USA) and analyzed using FCAP Array™ Software version 3.0 (BD Biosciences, San Jose, CA, USA). At least 2100 events were acquired for each sample.
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