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16 protocols using caspase 3 19677 1 ap

1

Western Blot Analysis of Apoptosis Markers

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Proteins were separated on 10% or 12% SDS-PAGE gel and transferred to PVDF membranes (Millipore, IPVH00010), which were blocked with 5% BSA (Genview, FA016). Next PVDF membranes were incubated with the following antibodies: SREBP1 (PA1-337, ThermoFisher), Bax (50599-2-AP, Proteintech), Bcl2 (12789-1-AP, Proteintech), Caspase 3 (19677-1-AP, Proteintech), Caspase 9 (#9502, Cell Signaling Technology), AKT (#4691, Cell Signaling Technology), p-AKT (#4060, Cell Signaling Technology), JNK (10023-1-AP, Proteintech), p-JNK (80024-1-RR, Proteintech) and β-Actin (AC004, Abconal). After washed 3 times with TBST buffer, PVDF membranes were then incubated with horseradish peroxidase-conjugated anti-rabbit or anti-mouse secondary antibodies (Thermo Fisher Scientific). Western blot band were visualized by digital gel image analysis system (TANON 5500) and Pro-Light chemiluminescence detection kit (TIANGEN, PA112-01).
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2

Taurine, Cisplatin, and Oxidative Stress

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Taurine (#T0625), cisplatin (#P4394), and H2DCFDA (#287810) were purchased from Sigma-Aldrich. The MDA assay kit (#S0131S) was purchased from Beyotime Biotechnology (China). Two primary antibodies were used: MyoD1 (ab64159, Abcam), Myogenin (67082-1-lg, Proteintech), MHC (3405S, Cell Signaling Technology), AKT (10176-2-AP, Proteintech), p-AKT (AP3434A, ABGENT), caspase 3 (19677-1-AP, Proteintech), GAPDH (10494-1-AP, Proteintech).
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3

Comprehensive Apoptosis Pathway Antibodies

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Primary antibodies for Bak (GTX100063), Bax (GTX109683), Bcl2 (GTX100064), Bcl-xL (GTX105661), GRP78 (GTX113340), GRP94 (GTX103203), PARP (GTX100573), calpain I (GTX102340), calpain II (GTX102499), cytochrome c (GTX108585), beclin1 (GTX134209), p53 (GTX70214), p62 (GTX102361), LC3B (GTX127375), ATG5 (GTX102360) and a voltage-dependent anion channel (VDAC; GTX104745) were purchased from GeneTex International Corporation (Hsinchu City, Taiwan). Caspase-3 (19677-1-AP) and caspase-9 (10380-1-AP) were purchased from Proteintech Group Inc. (Rosemont, IL, USA). CDK1 (MN ABE1403) and cyclin B (MM05373) was purchased from Merck KGaA, Darmstadt, Germany. Anti-mouse and anti-rabbit IgG-conjugated horseradish peroxidase, as well as rabbit polyclonal antibodies specific for β-actin (cat. no. SI-A5441; Sigma-Aldrich; Merck KGaA, Darmstadt, Germany) were used in study. All other chemicals were obtained from Sigma-Aldrich (St. Louis, MO, USA).
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4

Quantitative Western Blot Analysis of Protein Expression

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KFs were treated as previously described, and total proteins were extracted using RIPA lysis buffer and quantified with a bicinchoninic acid assay kit (Sigma-Aldrich, US). Equal amounts of protein were separated by SDS-PAGE and then transferred onto PVDF membranes (Millipore, MA). After blocking with 5% nonfat milk, the membranes were incubated with the appropriate primary antibodies overnight at 4°C. On the following day, the membranes were washed three times with TBST (Solarbio, US) and then incubated with species-matched secondary antibodies. The membrane-bound proteins were detected using an enhanced chemiluminescence detection kit (Pierce, US) and quantified using ImageJ software. The primary antibodies used were as follows: (i) p-Smad2 (SAB4301424) and p-Smad3 (SAB4301416) (all from Sigma-Aldrich, US); (ii) Smad2 (12570-1-AP), Smad3 (66516-1-Ig), Col-I (14695-1-AP), Col-III (22734-1-AP), α-SMA (55135-1-AP), Bcl-2 (12789-1-AP), Bax (50599-2-Ig), caspase-3 (19677-1-AP) and β-actin (20536-1-AP) (all from Proteintech, US). β-Actin served as an internal control [20 (link)].
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5

Antibodies and Reagents for Western Blot

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Primary antibodies against AEG-1/MTDH (13860-1-AP), E-cadherin (1702-1), N-cadherin (2447-1), and vimentin (2862-1) were obtained from Epitomics Inc. (Burlingame, CA, USA). Primary antibodies against poly-ADP-ribose polymerase (PARP) (BS70001), PI3K (BS3006), Bax (BS1030), Bcl-2 (BS1031), and C-myc (BS2462) were obtained from Bioworld Technology Inc. (Minneapolis, MN, USA). Primary antibodies against NF-κB-p65 (10745-1-AP), caspase-8 (13423-1-AP), caspase-9 (10380-1-AP), and caspase-3 (19677-1-AP) were obtained from Proteintech (Wuhan, China); Primary antibodies against Lamin A (sc-177452), AKT (sc-8312), p-AKT (sc-7985), ERK (sc-154), and p-ERK (sc-23759) were obtained from Santa Cruz Biotechnology (Santa Cruz Biotechnology Inc., CA). The GAPDH antibody was purchased from Boster (Wuhan, China). The secondary antibodies peroxidase-conjugated AffiniPure Goat Anti-Mouse IgG (H+L) (111-035-003), peroxidase-conjugated AffiniPure Goat Anti-Rabbit IgG (H+L) (111-035-003), Cy™ 3-conjugated AffiniPure Goat Anti-Rabbit IgG(H+L) (111-165-003), and Fluorescein (FITC)-conjugated AffiniPure Goat Anti-Rabbit IgG(H+L) (111-095-003) were obtained from Jackson Immuno Research Laboratories, Inc. (USA). Temozolomide (85622-93-1) was obtained from Meilun Biology Technology (Dalian, China).
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6

Survivin siRNA Transfection in Glioma Cells

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All oligonucleotides were synthesized and purified by Sangon Biotech Company (Shanghai, China). Survivin siRNA (5ʹ-AUUCACCAAGGGUUAAUUCdTdT-3ʹ) was synthesized by GenePharma Company (Shanghai, China). Deionized water used in all aqueous solutions was produced using a Millipore Ultrapure water machine (Massachusetts, USA). GelRed DNA gel stain solution was purchased from Biosharp (Beijing, China). Tris, magnesium chloride (MgCl2), and Triton X-100 were obtained from Macklin (Shanghai, China). Agarose was purchased from Biowest (Barcelona, Spain). U87, U251, and HUVEC cells were purchased from ATCC. Fetal bovine serum (FBS) and high-glucose Dulbecco’s modified Eagle’s medium (DMEM/high glucose) were bought from Gibco (NY, USA). A cell counting kit (CCK-8) was purchased from Bimake (Texas, USA). 4′6-Diamidino-2-phenylindole (DAPI) were obtained from Solarbio (Beijing, China). Primary antibodies β-actin (20536-1-AP), NCL (10556-1-AP), and Caspase-3 (19677-1-AP) were obtained from Proteintech (IL, USA). Survivin (YT4472) was purchased from Immunoway (TX, USA), and horseradish peroxidase-conjugated or CoraLite594-conjugated secondary antibodies were purchased from Proteintech (IL, USA).
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7

Western Blot Analysis of Brain Proteins

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Proteins were isolated from brain tissue samples and lysed in RIPA. Concentration of protein was determined by BCA protein assay kit (Cwbio, Beijing, China). The proteins were separated by SDS-PAGE, and transferred to a polyvinylidene difluoride (PVDF) membranes (Millipore, MA, USA). PVDF membranes were blocked with 5% non-fat dried milk, and incubated at 4°C overnight with primary antibodies: Arginase-1 (Arg-1) (9819; Cell Signaling Technology), Beclin-1 (3495; Cell Signaling Technology), caspase-3 (19677-1-AP; Proteintech), cleaved caspase-3 (9661, Cell Signaling Technology), inducible nitric oxide synthase (iNOS) (18985-1-AP; Proteintech), IL-1β (sc-7884; Santa Cruz), light chain 3 B (LC3B) (2775; Cell Signaling Technology), neuroligin (NLG)-1 (ab186279; Abcam), postsynaptic density-95 (PSD95) (3409; Cell Signaling Technology), and β-actin (TA-09, Zhongshan Golden Bridge Biotechnology). Secondary antibodies were applied and the signals were detected by enhanced chemiluminescence (Millipore, MA, USA). Semi-quantification of the blots was calculated by Image J software.
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8

Comprehensive Immunohistochemistry Protocol

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The immunohistochemistry was performed as described by our previous study [30 (link)]. The ATP8 primary antibody (ab130441) was purchased from Abcam. The primary antibodies including Bax (50599-2-lg), CytC (10993-1-AP), Bcl2 (12789-1-AP), and caspase 3 (19677-1-AP) were provided by Proteintech. The p-PERK (bs-3330R) primary antibody was purchased from Bioss.
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9

Western Blot Antibody Dilutions

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All primary antibodies were diluted at a ratio of 1:1000 as follows: PARP (9542S, Cell Signaling Technology), Caspase-3 (19677-1-AP, Proteintech), Cleaved Caspase-3 (9661S, Cell Signaling Technology), β-actin (60008-1-Ig, Proteintech), CDK4 (11026-1-AP, Proteintech), CDK6 (14052-1-AP, Proteintech), CyclinD1 (55506T, Cell Signaling Technology), AKT (9272s, Cell Signaling Technology), P-AKT Thr308 (9275s, Cell Signaling Technology), P-AKT Ser473 (4060S, Cell Signaling Technology). The second antibodies were diluted 1:5000 and purchased from Santa cruz (California, USA), including goat anti-Rabbit IgG (sc-2005) and rabbit anti-mouse IgG (sc-2004).
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10

Autophagy Regulation in Bacterial Infection

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BLP (Pam3Cys-Ser-Lys4, ab142085) was purchased from Abcam (Cambridge, UK). Gram-negative S. typhimurium (CMCC50097) and Gram-positive S. aureus (ATCC6538) were obtained from the Laboratory of Pathogenic Microorganism, Southern Medical University, Guangzhou, China. Antibodies against autophagy-related proteins (Autophagy Antibody Sampler kit #4445) and chloroquine (CQ) were purchased from Cell Signaling Technology (Beverly, MA, USA). Antibodies against Bcl2 (#26593-1-AP), Bax (#50599-2-Ig), and Caspase3 (#19677-1-AP) were obtained from ProteinTech (Chicago, IL, USA). We purchased 3-methyladenine (3-MA) (#189490) from Sigma-Aldrich (St. Louis, MO, USA). The siRNA targeting Atg3, Atg7, and scrRNA were obtained from GenePharma (Shanghai, China).
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