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2 protocols using lds sample buffer

1

Rhodobacter capsulatus Protein Analysis

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Rhodobacter capsulatus supernatants were concentrated 10-fold using a SpeedVac (Thermo Scientific). Fifteen microliter samples were mixed with 5 μL LDS sample buffer (Abcam). heated to 90°C for 10 min and then run on 4–20% TruPAGE denaturing gradient gel (Merck Life Science Ltd). Proteins were transferred to a PVDF membrane using a Mini-PROTEAN Tetra Cell blotting module (Bio-Rad Laboratories) in 1X transfer buffer (25 mM tris base, 0.2 M glycine, 20% methanol; pH8.5), 100 V for 1 h. The membrane was blocked in 5% (w/v) skimmed milk powder in 1X TBS for 1 h at room temperature. The anti-RcGTA major capsid protein antibody (Agrisera Ltd) was used at 1:1000 dilution in blocking buffer overnight at 4°C, followed by four 10 min washes in TBST. The secondary HRP-antibody conjugate was used at 1:2500 dilution in blocking buffer for 2 h at room temperature, followed by four 10 min washes in TBST. SuperSignal west femto maximum sensitivity substrate (Thermo Scientific) was used to develop the western and the signal was detected using an iBRIGHT chemi-imager (Thermo Scientific).
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2

Protein Expression Analysis in Glioma Cells

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Protein samples were extracted by lysing glioma cells in RIPA buffer containing a protease inhibitor cocktail (Sigma-Aldrich, St. Louis, MI, USA; Cat. # P8340) and 1 mM PMSF. Subsequently, 30 µg of proteins were denatured using 100 mM dithiothreitol and LDS Sample Buffer (Abcam, Cambridge, UK; Cat. # ab119196) and heating. The proteins were separated electrophoretically and transferred onto a PVDF membrane (Merck Millipore, St. Louis, MI, USA; Cat. # IPVH00010). The membranes were blocked with 5% non-fat milk in TBST for 1 h and incubated overnight at 4 • C with primary antibodies, including the Total OXPHOS Human WB Antibody Cocktail (Abcam, Cat. # ab110411), TOMM20 (Abcam, Cat. # ab186735), beta-actin (GenScript, Piscataway, NJ, USA; Cat. # A00730), Ser473-phospho-Akt (Cell Signaling Technology, Danvers, MA, USA; Cat. # 9271), Thr308phospho-Akt (Cell Signaling Technology Cat. # 9275), Akt (Cell Signaling Technology Cat. # 9272), Thr172-phospho-AMPKα (Cell Signaling Technology Cat. # 2535), and AMPKα (Cell signaling technology Cat. # 2532). Following this, membranes were washed in TBST and treated with HRP-conjugated secondary antibodies (GE Healthcare, Chicago, IL, USA). Protein detection was achieved by inducing chemiluminescence with Clarity Western ECL Substrate (Bio-Rad, Hercules, CA, USA; Cat. # 1705061) and visualized using the ChemiDoc XRS+ system (Bio-Rad)
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