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7 protocols using rps6kb1

1

Western Blot Analysis of Autophagy and Mitochondrial Markers

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Briefly, the mice organs were collected and disrupted in lysis buffer containing protease inhibitors (Roche Diagnostics, Berlin, Germany). After centrifugation, the supernatant was collected, and equivalent amounts of protein were subjected to sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to a nitrocellulose membrane. The protein bands were visualized using DyLight 800/DyLight 680-conjugated secondary antibodies, and an infrared fluorescence image was obtained using an Odyssey infrared imaging system (LI-COR Biosciences, Lincoln, NE, USA). Western blot analyses were performed by ImageJ with anti-Gapdh (KM9002, Sungene, Tianjin, China), anti-Lc3b (SAB4200361, Sigma, St Louis, MO, USA), anti-Sqstm1 (PM045, MBL International, Japan), and anti-Eva1a (NB110-74787, Novusbio, Littleton, CO, USA) antibodies. Antibodies against Ulk1, Akt, Mtor, Erk1/2, Lkb1, Ampk, Rps6kb1, and Eif4ebp1 and against phosphorylated Ulk1, Akt, Mtor, Erk1/2, Lkb1, Ampk, Rps6kb1, and Eif4ebp1 were purchased from Cell Signaling Technology (Boston, MA, USA). Antibodies against Drp1, Tomm20, Pink1, Parkin, Bnip3, Mitofusin2, and Pgc1 were purchased from Abcam (Cambridge, UK). DyLight 800/DyLight 680-conjugated secondary antibodies against mouse or rabbit IgG were purchased from Rockland Immunochemicals (Limerick, PA, USA).
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2

Alisertib-Mediated Signaling Pathway Study

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Alisertib was prepared and stored according to the manufacturer’s instructions (Millennium Pharmaceuticals, Inc., Cambridge, MA). Specific antibodies against p-MTOR(Ser2448), p-MEK1/2(Ser217/221), p-AKT(Ser473), p-AURKA(T288), mTOR, MEK, AKT, AURKA, RPS6KB1, p-RPS6KB1(T389), Phospho-(Ser/Thr) Phe, and β-Actin were purchased from Cell Signaling Technology (Beverly, MA). Recombinant human AURKA and RPS6KB1 proteins were obtained from Cell Sciences (Canton, MA). Specific antibodies against KRAS were purchased from Santa Cruz Biotechnology (Dallas, TX). KRAS-G12D lentiviral vector was purchased from Applied Biological Materials (Richmond, BC, Canada). Tet-One™ Inducible Expression System and Tet System Approved FBS were purchased from Clontech (Palo Alto, CA). Transfection reagent LipoJet was purchased from SignaGen Laboratories (Gaithersburg, MD). Tet-on expression system, doxycycline-free fetal bovine serum, and human cell cycle arrays were purchased from Clontech (Palo Alto, CA).
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3

Western Blot Analysis of Breast Cancer Cells

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Breast cancer cells were lysed in lysis buffer (2 g SDS, 1.55 g DTT, 6 ml Tris (1 M, pH 6.8), 10 ml glycerol, and ddH2O up to 100 ml). Fifty to eighty micrograms of the total protein was separated on an SDS/PAGE (12% gel), and then was transferred on to PVDF membrane (Millipore). The membranes were blocked with 5% skim milk dissolved in PBS and Tween 20 (PBST) for 1 h at room temperature and incubated with primary antibodies overnight at 4°C. After incubating with horseradish peroxidase-conjugated secondary antibodies at room temperature for 2 h, the immune activity on the membranes was detected with ECL-Plus kit (Amersham Biosciences). Antibody against eukaryotic translation initiation factor 4E (eIF4E) (#2067), AMPKα (#5832), and ribosomal protein S6 kinase B1 (RPS6KB1) (#2708) were purchased from Cell Signaling Technology. Antibody against GAPDH was purchased from Santa Cruz Biotechnology (SC-32233). All the secondary antibodies were from Santa Cruz Biotechnology.
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4

Antibody Characterization for AKT Signaling

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We obtained antibodies to AKT (Cell Signaling Technology, 9272), p-Thr308 AKT (Cell Signaling Technology, 5106), p-Ser473 AKT (Cell Signaling Technology, 9271), GAPDH (Santa Cruz Biotechnology, sc-25,778), LC3B (Cell Signaling Technology, 2775), MAPK8/9 (R&D Systems, AF1387), p-Thr183/Tyr185 MAPK8/9 (Cell Signaling Technology, 9255 [Figure 3] and Cell Signaling Technology, 4668 [Figs. S8 and S9]), RPS6KB1 (Cell Signaling Technology, 9202), p-Thr389 RPS6KB1 (Cell Signaling Technology, 9206), SQSTM1 (Progen, GP62-C), and TUBA (Millipore Sigma, T5168), from the indicated suppliers.
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5

Quantitative Protein Analysis by Western Blot

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In an ice-cold radioimmunoprecipitation assay (RIPA) complemented with protease inhibitors, cells or human tissue were lysed for 30 minutes, then centrifuged at 13,000 rpm at 4°C for 15 minutes. The protein concentration was determined using a bicinchoninic acid test and SDS-polyacrylamide gel electrophoresis was used to analyze the protein extracts. The transfer was performed in the transfer buffer (20 mM Tris, 150 mM Glycin, 20% methanol). The nitrocellulose membranes were blocked with 5% non-fat milk for 2 hours prior to overnight incubation by first antibodies against RPS6KB1 (Cell Signaling Technology, Danvers, MA) and GAPDH (Bioworld, Nanjing, China). The membranes were incubated by secondary antibodies for 2 hours, washed, and protein bands were visualized by the electrochemiluminescence detection system (Thermo Fisher Scientific).
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6

Trastuzumab and AZD8055 inhibit mTOR pathway

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Trastuzumab (Roche Pharmaceutical Ltd., Switzerland) was solubilized in sterile water containing 1.1% benzyl alcohol (stock solution at 100μg/mL, stored at 4°C). Chemicals used are as follows: AZD8055 (Medchem express, USA), dimethyl sulfoxide (DMSO) (Amresco, USA), Dithiothreitol (DTT) and iodoacetamide (IAA) (Sigma-Aldrich, USA), DAPI (Beyotime Biotechnology, China). Cell Count kit-8 was purchased from Dojindo (Kumamoto, Japan). Antibodies against the following proteins were used for immunoblotting: HER-2 (Abcam, UK), mTOR (Abcam, UK), AKT1S1 (Abcam, UK), RPS6KB1 (Cell Signaling Technology, USA), p-RPS6KB1 (Thr421/Ser424) (Cell Signaling Technology, USA), AKT (Cell Signaling Technology, USA), p-AKT(Ser473) (Cell Signaling Technology, USA), β-actin (Cell Signaling Technology, USA). Horseradish peroxidase-labeled goat anti-rabbit and anti-mouse secondary antibodies were purchased from ZSGB-BIO (Beijing, China).
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7

Western Blot Analysis of Autophagy Proteins

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Soluble proteins were harvested from cells by using SDS lysis buffer (50 mM Tris HCl, pH 6.8 containing 10% glycerol, 2% SDS, 10 mM dithiothreitol, 0.005% bromophenol blue). Equal volumes of proteins were separated by 8% or 12.5% SDS-PAGE and transferred to polyvinylidene fluoride membranes (Merck Millipore, IPVH00010). Blots were then blocked and immunolabeled overnight at 4C with primary antibodies, anti-MAP1LC3 (MBL International Corporation, PM036), p-MTOR (S2448) (Cell Signaling Technology, 2971), MTOR (Cell Signaling Technology, 4517), p-RPS6KB1 (T389) (Cell Signaling Technology, 9206), RPS6KB1 (Cell Signaling Technology, 9202), SQSTM1 (BD Biosciences, BD610833), TFEB (Cell Signaling Technology, 4240), VDAC1 (Abcam, 154,856), SLC6A4 (Abcam, 102,048), and ACTB (Abcam, 8226). Immunolabeling was visualized using an enhanced chemiluminescence kit (Bio-Rad Laboratories, 170–5061) according to the manufacturer’s instructions. Images were quantified using Image Lab software (Bio-Rad, Hercules, CA, USA). ACTB was used as an internal control. All band intensity is proportional the amount of target protein on the membrane with the linear range of detection.
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