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43 protocols using 5 bromo 2 deoxyuridine brdu

1

Pancreatic Tissue Analysis in Gerbils

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Four gerbils randomly selected from each group, were injected with 100 µg/kg body weight 5-bromo-2-deoxyuridine (BrdU; Roche Molecular Biochemicals) at the end of the experimental period. Six hours post-injection, the dissected pancreas was fixed in a 4% paraformaldehyde solution (pH 7.2) at room temperature for 16 h and embedded in paraffin blocks. Serial 5-μm paraffin-embedded tissue sections were mounted on slides, and they were rehydrated for the immunohistochemistry method.
Every sixth or seventh pancreas section was incubated with a guinea pig anti-insulin antibody. The anti-insulin antibody-stained areas of the pancreas were measured using anti-insulin (Zymed Laboratories, South San Francisco, CA, USA), and the percentage of the stained area from the total pancreas area was calculated. The β-cell proliferation was identified by incorporating BrdU into β-cells using the anti-BrdU antibody (Roche, Mannheim, Germany). The β-cell apoptosis was determined using a TUNEL assay (Roche) and double-stained with hematoxylin and eosin to visualize the islets [17 (link)]. The BrdU+ incorporated cells and apoptotic bodies of the islets were quantified based on the total islet numbers [27 (link)].
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2

Cell Proliferation Analysis Using BrdU

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For cell proliferation studies, wounded animals were injected intraperitoneally with 5-bromo-2′-deoxyuridine (BrdU) at 0.25 mg/gram (Roche) three hours prior to the time that the animals were sacrificed. Wounds were excised, fixed, and processed for immunocytochemical analysis. Proliferating cells were detected using a BrdU labeling and detection kit (Roche, Indianapolis, IN, USA) according to the manufacturer′s instructions. For in vitro studies, sterile filtered 10 µM BrdU was prepared in media. After 12 h of vitamin D treatment, cells were washed with phosphate buffered saline (PBS), and replaced with the BrdU solution for a 2 h labeling period. Cells were fixed and then detected as above. Cell counting analysis was performed using the “spot” function on the Imaris (version 8.4, Bitplane, Concord, MA, USA) software.
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3

BrdU Labeling of Mammalian Brain Cells

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BrdU crystals (5-Bromo-2-deoxyuridine, BrdU, Roche Applied Science, # 10280879001) were dissolved in 0.07 M NaOH solution warmed to 65°C. Pregnant mice (from gestational day 9 to 18) and male pups (from P0 to P8) were given a single i.p. injection around 10 a.m. (50mg/kg).
Tissue preparation. 21 to 23 days after birth (P21-P23), BrdU-injected male mice were anesthetized with isoflurane and perfused transcardially with a 0.9% NaCl solution, followed by an ice-cold solution of 4% paraformaldehyde in 0.1 M phosphate buffer, pH 7.4. Brains were quickly removed, postfixed in the same fixative for two hours at 4°C, and immersed in 20% sucrose in 0.1M phosphate-buffered saline (PBS) at 4°C overnight. Brains were finally either embedded in ice-cold OCT medium (optimal cutting temperature embedding medium, Tissue Tek, Sakura) and frozen in liquid nitrogen-cooled isopentane (most of the postnatally injected animals) or directly frozen in crushed dry ice without OCT (all prenatally injected animals). The different groups (n=3 to 7 per group) were then called “E9”, “E10”, “P1”, …: these developmental time points correspond to the day of the single i.p. BrdU injection.
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4

Oligodendrocyte Progenitor Cell Proliferation

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OPCs were plated on 8‐well Permanox chamber‐slides (Nunc, Naperville, IL), precoated with 5 µg/mL PLL followed by appropriate aFn or pFn coatings (described above), at a density of 30,000 cells per well. OPCs were allowed to incorporate 5‐bromo‐2‐deoxyuridine (BrdU; 10 µM; Roche) for 24 h in the presence of 10 ng/mL PDGF‐AA and 10 ng/mL FGF‐2. Then, cells were fixed in 4% PFA for 20 min, and additionally fixed in 5% acetic acid in ethanol for 20 min. BrdU was detected using reagents from the BrdU labeling and Detection Kit I (Roche) according to the manufacturer's instructions with the addition of the oligodendrocyte lineage marker Olig2 (Abcam) and Alexa Fluor© 546‐conjugated anti‐rabbit antibody, and visualization of nuclei with DAPI (1 µg/mL). To compare the percentages of BrdU‐incorporating cells between the conditions, the numbers of double BrdU‐ and Olig2‐positive cells were counted relative to the Olig2‐positive cells (at least 150 cells per condition) from images captured with a Leica TCS SP8 Confocal Laser Scanning Microscope.
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5

Cell Proliferation Assay for VSMCs

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The cell proliferation assay was performed by measuring 5-Bromo-2′-deoxy-uridine (BrdU) (Roche Applied Science, USA) incorporation into the newly synthesized DNA of replicating cells. To determine cell proliferation, VSMCs were plated in 96-well plates and allowed to attach for 24 hours. Cells were then treated with 1 uM Pioglitazone, 10 uM GW9662 or transduced with the recombinant adenovirus for 24 hours. The cells were loaded with BrdU in the last 4 hours of treatment. BrdU incorporation was quantified by an immunofluorescence assay kit (Roche Applied Science, USA) following manufacturer’s instructions. Three fields were chosen randomly from various sections to ensure objectivity of sampling. Digital images were acquired using a confocal microscope. Each assay repeated three times. The total 100 cells from each field were counted, and BrdU positive cell and the ratio of BrdU positive cell versus 100 cells were calculated using a confocal microscope. Each assay repeated three times.
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6

BrdU Incorporation Quantification

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Cells were allowed to incorporate 5-bromo-2-deoxyuridine (BrdU) (10 μM; Roche) for 24 h. Cells were fixed in PFA for 20 min and additionally fixed in 5% acetic acid in ethanol for 20 min. BrdU was detected using reagents from the BrdU Labelling and Detection Kit I (Roche) according to the manufacturer’s instructions. The numbers of BrdU-positive nuclei were blindly counted relative to the Iba1- or IB4-positive cells (at least 150 cells per condition).
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7

Osteogenic Potential of PLGA/Ag/HA Composites

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Poly(lactide-co-glycolide) (PLGA (glycolide 15 mol%) average molecular weight (Mw) 240000), silver nitrate (AgNO3), and spherical hydroxyapatite (sHA) were purchased from Sigma-Aldrich. Osteoblast (MC3T3-E1) cell line was obtained from Korea Cell Bank. The 5-bromo-2-deoxyuridine (BrdU) and alizarin red staining kits were supplied by Roche Molecular Biochemicals, USA, and Millipore, USA, respectively, whereas fetal bovine serum (FBS) and penicillin G-streptomycin were acquired from Gibco, Japan. All reagents and chemicals in this study were used as received.
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8

BrdU Cell Proliferation Assay

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Cell proliferation was determined by 5-bromo-2-deoxyuridine (BrdU; Roche, Mannheim, Germany) incorporation according to the manufacturer’s instructions. In brief, the cells were plated onto a 96-well plate at a density of 5 × 103 cells/well and allowed to grow until 80% confluence. Then, the cells were maintained under treatment conditions with 10% BrdU for 24 h. Subsequently, the cells were incubated in a DNA denaturant for 30 min, and the peroxidase-conjugated anti-BrdU antibody was then added and incubated for 90 min. Next, the cells were held in substrate solution for 30 min, and the final solution was analyzed by a spectrophotometer (Varioskan Flash; Thermo Fisher Scientific) at 370 nm (λref = 492 nm). The relative proliferation of the cells was determined as a percentage of the proliferation of the DPBS group.
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9

Neonatal Mouse Retinal Proliferation Assay

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For proliferation assay, neonatal mice were injected with 5-bromo-2-deoxyuridine (BrdU, 120 mg/kg of body mass; Roche Applied Science, Indianapolis, IN), and euthanized after 60 minutes. Retinas were fixed in 4% paraformaldehyde with the rest of the eyes still attached, and stored in 70% ethanol overnight. Thereafter, fixed retinas were dissected away from other eye structures, treated with 1% Triton X-100 in PBS for 30 minutes at room temperature, and then incubated in 2 mol/L HCl for 1 hour at 37°C. Processed retinas were double stained with mouse anti-BrdU antibody (BD Biosciences, San Jose, CA) and rabbit anti-Pax2, followed by goat anti-mouse IgG-Alexa fluor®-594 and goat anti-rabbit IgG-Alexa fluor®-488.
Apoptosis was monitored by IF staining with anti-active Caspase 3 (Abcam, Cambridge, MA). For positive control, neonatal mice were exposed to 75% oxygen at P7-P8 for 16 hours, returned to room air, and euthanized. Retinas from oxygen exposed mice were dissected, fixed, and stained with anti-active Caspase 3.
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10

Bevacizumab Inhibits B3 Cell Proliferation

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B3 cells were seeded in 48-well plates and cultivated for 24 hours to 50%–60% confluence in MEM supplemented with 10% FBS. On reaching the desired level of confluence, cultivation medium was replaced with serum-free MEM, and cells were incubated for 24 hours. After 24 hours, the medium was changed to MEM containing 0.1 mg/mL, 0.5 mg/mL, 1 mg/mL, 2 mg/mL, or 4 mg/mL bevacizumab supplemented with 10% FBS. Control cells were incubated with growth medium containing PBS. After 72 hours, 5-bromo-2′-deoxyuridine (BrdU; Hoffman-La Roche Ltd, Basel, Switzerland) was added to the medium and reincubated for 1.5–2 hours. Cells were washed with PBS three times and denatured. Incorporated BrdU in LECs was detected by anti-BrdU–peroxidase conjugated antibody, and photometric detections were performed using BrdU ELISA kit (Hoffman-La Roche Ltd) and ELISA reader. Each experiment was performed at least ten times.
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