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69 protocols using facsdiva 7

1

Intracellular ROS and Cell Death Measurement

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The overproduction of intracellular ROS was measured with dihydroethidium (DHE) staining (D11347, ThermoFisher Scientific, Waltham, MA, USA). JJN3 and U266 cells were seeded at a density of 2 × 105 cells/mL/well into 24-well plates and incubated for 24 h before treatments with 20–80 µg/mL of 5,6 α/β-ECs or with 250 or 500 μM H2O2 as positive controls. Cells were further incubated with 2 µM DHE for 15 min at 37 °C. The production of O2− was monitored by oxidized DHE that exhibits an orange/red fluorescence [11 (link)]. The signal was collected from a minimum of 104 events for each sample using the BD FACSCanto II flow cytometer (BD Biosciences) and data were processed with the BD FACSDiva 7 software (BD Biosciences).
JJN3 or U266 cells were plated for 24 h in 24-well plates (2 × 105 cells/well), treated with 5,6 α-EC or 5,6 β-EC (20–80 µg/mL) alone or after a 2 h-pretreatment with 400 µM vitamin E (Vit E, #258024, Sigma-Aldrich, Saint Louis, MO, USA). After 24 or 48 h of treatment, cells were stained with 1 µg/mL PI (#P4170, Sigma-Aldrich, Saint Louis, MO, USA). At least, 104 events per sample were acquired and analyzed by flow cytometry BD FACSCanto II. Data were processed using BD FACSDiva 7 software (BD Biosciences, Franklin Lakes, NJ, USA).
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2

Cell Cycle Analysis by Flow Cytometry

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Cells were harvested and washed twice with phosphate-buffered saline (PBS) followed by fixation with 80% ethanol for 30 min at room temperature. Cells were then collected by centrifugation and stained with 50 µg/µL propidium iodide. The cells were then treated with 100 µg/µL RNAse for 15 min at 37°C followed by analysis using a BD Fortessa Flow Cytometer. Cell cycle distribution was analyzed using BD FACSDiva 7.0 software. We used two-parameter flow cytometry with forward (FSC) and side scatter (SSC) information, along with PE-TexasRed signal on an untreated (not synchronized) sample to determine the size distribution and locations of G1 and G2 phases on the plot (SSC vs. FSC; FSC vs. FSC and PE-TexasRed vs. FSC). Next, we analyzed the samples collected at different times after synchronization to assess the cell cycle distribution at each time point. We used this information to set the timing of the luciferase reporter experiments, as shown in Figure 4.
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3

Flow Cytometry Protocol for Co-Culture Analysis

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Flow cytometry was performed on LSRII flow cytometer (BD Biosciences, San Jose, USA) with 488 nm excitation from a blue solid-state laser for all the co-culture experiments. Fluorescence was detected using a 505 nm long-pass and a 530/30 nm band-pass filter set for sgfp. Cells were collected with centrifugation (2 min, 20,000×g) followed by washing and dilution in cold phosphate buffered saline (PBS) and stored on ice until evaluation [35 (link)]. . To avoid debris and clumped cells, gating was performed on forward and side scatter by using BD FACSDiVa 7.0 software. The specific fluorescence was defined as the value of geometric fluorescence mean of 100,000 cells (given in a.u.).
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4

Multiparametric Flow Cytometry of Immune Cells

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Flow cytometry on enriched Lin cells was performed with a combination of the following fluorescence-conjugated mAbs (all from Miltenyi Biotec unless specified otherwise): APC-conjugated anti-NKp46 (29A1.4.9), anti-CD90.2 (30-H12), anti-Rorγ (t; REA278), anti-FcRIa (MAR-1), anti-CD4 (GK1.5); PE-conjugated anti-NK1.1 (PK136), anti-CD25 (7D4), anti-T1-ST2 (DIH9, from Biolegend), anti-CD117 (3C11), anti-IL-9 (RM9A4) and anti-IL-2 (JES6-5H4). For intracellular staining, phorbol 12-myristate 13-acetate (PMA)/ionomycin-stimulated cells were added of brefeldin, and then permeabilized with the CytoFix/CytoPerm kit (BD Biosciences) for intra-cytoplasmic detection of IL-9 and IL-2. Flow cytometry was done at 4 °C on cells first exposed to Fc receptor mAb (2.4G2). Cells were analysed with a BD LSRFortessa flow cytometer equipped with BD FACSDiva 7.0 software.
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5

Apoptosis and Necrosis Quantification

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The cells at 6h after different treatments were gently trypsinized, washed in cold PBS and re-suspended in 500μL binding buffer. Then, cells were incubated with 5μL/tube Annexin V-FITC for 15 min at 25°C in the dark, and 5μL/tube PI was added. Samples were analyzed using a flow cytometer. The early apoptotic cells, late apoptotic cells and the necrotic cells were estimated as the percentage of the total number of cells by BD FACSDiva 7.0 software.
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6

Flow Cytometric Analysis of BrdU Incorporation

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For BrdU labeling experiment, BrdU (final 20uM) was added to the medium for 2 h before cells were collected and cells were harvested and fixed in 70% ethanol. The cells were permeabilized with 2 N HCl–0.5% Triton X-100, neutralized with 0.1 M sodium tetraborate, stained with monoclonal anti-BrdU (BD Biosciences), and then with anti-mouse IgG F(ab)2-FITC (Sigma), and counterstained with PBS-7-AAD-RNase A. Measurements of the immunofluorescent cells were performed with a FACS Calibur analyzer (BD) and analyzed with FCSexpress software.
Flow cytometric analysis was performed on a BD FACSAria™ III sorter instrument equipped with BD FACSDiva™ 7.0 software (BD Biosciences, New Jersey, USA). FITC 490nm fluorescence was acquired in logarithmic amplification in FL1 and 7-AAD 650nm fluorescence was acquired in linear amplification in FL3.
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7

BrdU Labeling and Flow Cytometry Analysis

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For the bromodeoxyuridine (BrdU) labeling experiment, BrdU (Final 20 μM) was added to the medium 2 h before collection of cells. Cells were then harvested and fixed in 70% ethanol. The cells were permeabilized with 2 N HCl–0.5% Triton X-100, neutralized with 0.1 M sodium tetraborate, stained with monoclonal anti-BrdU (BD Biosciences), and then with anti-mouse IgG F(ab)2-FITC (Sigma), and counterstained with PBS-7-AAD-RNase A. Flow cytometric analysis was performed on a BD FACSAria™ III sorter instrument equipped with BD FACSDiva™ 7.0 software (BD Biosciences, New Jersey, USA). FITC 490 nm fluorescence was acquired in logarithmic amplification in FL1 and 7-AAD 650 nm fluorescence was acquired in linear amplification in FL3. Cell cycle analysis was done using Cytomics™ FC500 Flow Cytometry CXP 2.0.
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8

Fc Receptor Blocking for Immunophenotyping

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All staining reactions were performed at 4°C on cells first exposed to Fc receptor mAb (2.4G2) in order to reduce nonspecific binding. Anti CD11b (M1/70) and anti-CD11c (N418) were purchased from BD Biosciences-Pharmingen. Cells were analyzed with a BD LSRFortessa flow cytometer (BD) equipped with BD FACSDiva 7.0 software.
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9

Genome Size Comparison in B. tabaci

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The raw data of nuclei peaks were processed using BD FACSDiva 7.0 software (BD Biosciences, New Jersey, USA). The nuclear DNA content of the samples was expressed as the mean ± standard error (SE). One-way ANOVAs and the Tukey test (SPSS for Windows, Rel. 17.0.0 2009; Chicago: SPSS Inc.) were used to compare the 1C genome sizes of B-type females, B-type males, Q-type females, and Q-type males of B. tabaci.
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10

Endothelial Cell Adhesion Molecule Analysis

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After incubations, the PLTs were removed from cultures; HUVECs were washed once with PBS and detached with trypsin/EDTA solution trypsin (0.25%). Antibodies used for flow cytometry to recognize endothelial adhesion molecules were all purchased from BD Pharmingen (San Diego, CA, USA); anti-CD62P-fluorescein isothiocyanate (FITC; P-selectin; clone AK-4), PAC-1-FITC (recognizes αIIbβ3 in its activated conformation), anti-CD54-phycoerythin (PE; ICAM-1, clone LB-2), anti-CD106-FITC (VCAM-1, clone 5110C9) and anti-CD62E-Allophycocyanin (APC; E-selectin, clone 68-5H11). Flow cytometric analysis (10 000 events) was performed using a FACSCalibur flow cytometer and BD FACS DIVA 7.0 software (BD, San Jose, CA, USA). Possible alterations in HUVEC phenotype and activation state following trypsin treatment should not be overlooked; however control and experimental HUVEC were treated with trypsin in a similar manner and differences between groups were therefore not the consequence of trypsin application.
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