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Silica gel 60

Manufactured by Avantor
Sourced in Belgium, Germany, United States

Silica gel 60 is a type of silica-based adsorbent material commonly used in chromatography and other laboratory applications. Its primary function is to provide a high-surface-area medium for the separation, purification, and retention of various chemical compounds. Silica gel 60 is characterized by its uniform particle size and distribution, which enables efficient and reliable performance in analytical and preparative procedures.

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8 protocols using silica gel 60

1

Quantitative Sterol Analysis by HP-TLC

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The dried lipids from sterol substituted cells were dissolved in 200 μL of methanol/chloroform (1:1 v/v). A 20 μL aliquot was then loaded on a HP-TLC plate (Silica Gel 60, VWR International) along with sterol standards. After air drying for 5 min, plates were placed in a glass tank containing hexane/ethyl acetate (3:2 v/v). When the solvent front reached the tops of the HP-TLC plates, they were removed from the tank, dried, and sprayed with a solution of 3% (w/v) cupric acetate and 8% phosphoric acid (v/v) dissolved in water. The plate was air dried again and heated at 180–200 °C in an oven until the charred sterol bands clearly appeared. The intensities of sterol bands were analyzed by densitometry using the ImageJ program [31 (link)], and the sterol amounts were quantitated by comparison to a standard curve on the same HP-TLC plate using the SlideWrite Plus program (Advanced Graphics Software, Inc., Encinitas, CA). Sterol amounts were normalized to the protein levels in the tubes from which the sterols were purified.
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2

Extraction and Fractionation of Seaweed C. tomentosum

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Freeze-dried samples of C. tomentosum (445 g) were sequentially extracted with methanol (MeOH) and dichloromethane (DCM) (VWR-BDH Chemicals, Fontenay-sous-Bois, France) (in a biomass/solvent ratio of 1:40) with constant stirring, overnight. Crude dried extracts were obtained using a rotary evaporator (IKA HB10, Staufen, Germany) and/or a speed vacuum equipment (Concentrator Plus, Eppendorf, Spain). The MeOH (112.64 g, 25.31%) and DCM (6.47 g, 1.45%) crude extracts were subjected to a normal phase vacuum liquid chromatography (VLC) on silica gel 60 (0.06–0.2 mm, VWR, Leuven, Belgium). Elution was performed by using cyclohexane with increasing amounts of ethyl acetate (v/v) as the mobile phase: 1:0 (MF1, 0.02 g; DF1, 0.06 g), 2:1 (MF2, 0.66 g; DF2, 0.16 g), 2:2 (MF3, 0.18 g; DF3, 0.15 g) 1:2 (MF4, 0.11 g; DF4, 0.10 g) 0:1 (MF5, 0.13 g; DF5, 0.63 g), MeOH (MF6,1.35 g; DF6, 1.39 g), and acetone (MF7, 3.38 g; DF7 0.86 g), 400 mL of each eluent (Figure 1). Fractionation yields were determined in relation to biomass of freeze-dried seaweed. The fractions attained were subjected to a series of in vitro biological assays, in order to evaluate their antioxidant and neuroprotective potential.
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3

Lipid Bilayer Membrane Characterization

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Porcine brain sphingomyelin (SM); 1-palmitoyl-2-oleoyl-phosphatidylcholine (POPC); 1-palmitoyl-2-oleoyl-phosphatidylethanolamine (POPE); 1-palmitoyl-2-oleoyl-L-serine (POPS); cholesterol (CHOL) and 1-palmitoyl-2-6-[(7-nitro-2-1,3-benzoxadiazol-4-yl)amino]hexanoyl- phosphatidylcholine (C6-NBD-PC) were purchased from Avanti Polar Lipids (Alabaster, AL). [3H]-cholesterol was purchased from American Radiolabeled Chemicals, Inc (St. Louis, MO). Lipids were dissolved in chloroform and stored at −20°C. Concentrations of lipids were measured by dry weight. (2-hydroxypropyl)-α-cyclodextrin (HPαCD) average molecular weight 1180, 1 M 2,4,6-trinitrobenzenesulfonic acid in water (TNBS) and sodium hydrosulfite (sodium dithionite) were purchased from Sigma-Aldrich (St. Louis, MO). LW peptide (acetyl-K2W2L8AL8W2K2-amide) and pL4A18 peptide (acetyl-K2LA9LWLA9LK2-amide) were purchased from Anaspec (San Jose, CA) and used without further purification. High-performance thin-layer chromatography (HP-TLC) plates (Silica Gel 60) were purchased from VWR International (Batavia, IL).
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4

Synthesis of Deuterated Furan-2(5H)-one

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Isotopically unmodified reference compounds bis(methylsulfanyl)methane
and furan-2(5H)-one were purchased from Merck (Darmstadt,
Germany). (2H8)Naphthalene was also from Merck.
(2H8)Bis(methylsulfanyl)methane was synthesized
as detailed in the literature.29 (link) (2H2)Furan-2(5H)-one was synthesized
according to a procedure published previously30 (link) but with some modifications. In brief, 3a,4,7,7a-tetrahydro-4,7-epoxy-2-benzofuran-1,3-dione
(abcr, Karlsruhe, Germany) was deuterated with sodium borodeuteride
(Cambridge Isotope Laboratories, Tewksbury, MA, USA) under an argon
atmosphere. Acidic workup led to the intermediate (3,3-2H2)-3a,4,7,7a-tetrahydro-4,7-epoxy-2-benzofuran-1(3H)-one, which was extracted by dichloromethane instead of
chloroform and then purified by chromatography (3 cm column diameter)
on silica gel 60 (0.040–0.063 mm; VWR, Darmstadt, Germany;
60 g). After being washed with n-hexane/ethyl acetate
(50/50, v/v; 150 mL), the compound was eluted with n-hexane/ethyl acetate (25/75, v/v; 150 mL) and ethyl acetate (200
mL). The solvents were removed in vacuo, and the purified (3,3-2H2)-3a,4,7,7a-tetrahydro-4,7-epoxy-2-benzofuran-1(3H)-one was heated to 150 °C at 15 mbar to distill off
the target product (5,5-2H2)furan-2(5H)-one (96% purity by GC–flame ionization detector)
obtained in a retro-Diels–Alder reaction.
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5

Synthesis and Characterization of Novel Organic Compounds

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Unless otherwise stated, starting materials and reagents were obtained from Sigma Aldrich, Munich, Germany and were used without further purification. Melting points were determined on a Büchi 530 apparatus and are uncorrected. All 1H-NMR and 13C-NMR spectra were recorded in CDCl3 (if not otherwise indicated) solution at 399.94 MHz and 75.42 MHz, respectively, with a Varian VXR 5000 spectrometer Varian, (Palo Alto, CA, USA). Chemical shifts are given in ppm (δ); multiplicities are indicated by s (singlet), d (doublet), t (triplet), q (quartet), m (multiplet) or dd (doublet of doublets). Elemental analyses were performed using an elemental analyzer model 240 C (Perkin-Elmer, Walthan, MA, USA). Acetone was freshly distilled from CaCl2. Flash chromatography was carried out with silica gel 60 (230–400 mesh) (VWR, Radnor, AF, USA) eluting with an appropriate solution in the stated v:v proportions. All reactions were monitored by analytical thin-layer chromatography (TLC) with 0.25 mm thick silica gel plates (60 F 254) (Sigma Aldrich, Munich, Germany). Melting points were determined on a 530 apparatus (Büchi, Flawil, Switzerland) and are uncorrected. The purity of all new compounds was judged to be >98% by 1H-NMR spectral determination.
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6

Reagent Purification and TLC Analysis

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Reagents were purchased from
Chem-Impex International, Aldrich, Fluka, and Sigma-Aldrich Co. and
used without further purification unless otherwise noted. All solvents
for syntheses were anhydrous. Thin layer chromatography was performed
with precoated aluminum-backed TLC plates obtained from VWR: Aluminum
Oxide 60, Neutral F254 & Silica Gel 60, Neutral F254. Visualization
of TLC plates was performed with ninhydrin, iodine, or an UVGL-25
Compact UV Lamp 254/365 UV (UVP 115 V ∼ 60 Hz/0.16 Amps). Purifications
were performed either with aluminum oxide (Brockmann I, Sigma-Aldrich),
silica (Silicycle, Quebec City, Canada), or on a Biotage Isolera 4
Purification System equipped with a 200–400 nm diode array
detector. For flash purifications, Biotage SNAP Flash Chromatography
Cartridges were used (KP-C18-Sil & KP-NH).
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7

Photosensitive Compound Synthesis and Characterization

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Ethyl acetimidate hydrochloride and 4-(dibutylamino)benzaldehyde (DBA) were purchased from Sigma-Aldrich and used without further purification. The solvents and other reagents were purchased from Sigma Aldrich, Fluka and Merck and were dried and purified by standard laboratory methods. Trimethylolpropane triacrylate (TTA, Genomer 1330) and ethoxylated-(20/3)-trimethylolpropane triacrylate (ETA, Sartomer 415) were received as a gift from Rahn and Sartomer, respectively. Thin layer chromatography analysis was performed on silica gel 60 F254 aluminium sheets from Merck. Column chromatography was performed by preparative MPLC using a Buechi Sepacore Flash System (Buechi pump module C-605, Buechi control unit C-620, Buechi UV-Photometer C-635 with peak detection set at λ = 295 nm, Buechi fraction collector C-660). Glass and polyethylene columns were used, packed with Silicagel 60 on VWR silica gel 60 (0.040–0.063 mm particle size).
The preparation and analysis of the photosensitive compounds and formulations was conducted in an orange light lab. The windows and fluorescent lamps were covered in adhesive foils or coated so that light with a wavelength < 520 nm was cut off.
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8

Synthesis of Fluorinated Benzyl Halides

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Solvents and reagents: Commercially available starting materials were purchased from Sigma-Aldrich, ABCR GmbH & Co. KG, Alfa Aesar, Fluorochem and Apollo Scientific and were used without further purification. Solvents were obtained from Sigma-Aldrich and LPCR. All reactions were performed in standard glassware. Thin Layer Chromatography (TLC) were used to monitor reactions (vide infra). Crude mixtures were purified by flash column chromatography. The latter were performed using silica gel 60 (230-400 mesh, 0.040-0.063 mm) purchased from VWR. Monitoring and primary characterization of products were achieved by Thin Layer Chromatography on aluminium sheets coated with silica gel 60 F254 purchased from E. Merck. Eluted TLC's were revealed under UV (325 nm and 254 nm) and/or with chemicals. Nuclear Magnetic Resonance (NMR): The NMR spectra were recorded on a Bruker avance 400 apparatus (1H NMR 400 MHz, 13 C NMR 101 MHz, 19 2t was synthetized according to a published procedure starting from the commercially available p-toluidine. 19 4-trifluoromethylbenzyl iodide 2a' was obtained from nucleophilic substitution on 2a. 20
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