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2 protocols using anti p84

1

Analysis of US28-Mediated Signaling Pathways

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THP-1 cells, transduced to express various constructs of HA-US28, were lysed in radioimmunoprecipitation assay (RIPA) buffer, and nuclei and cell debris were removed by centrifugation at 13,000 × g for 10 min at 4°C. Proteins were separated on 10% SDS-polyacrylamide gels and transferred to nitrocellulose membranes (Axygen; Corning). Incubations with primary and secondary antibodies were performed using 5% skimmed milk for 1 h each at room temperature. Proteins were detected using the following antibodies: anti-p42/p44 or phosphor-anti-p42/p44 antibodies or anti-MSK1 or anti-phosphor-MSK1 antibodies (serine 360) (all 1:1,000; Cell Signalling Technology, Danvers, MA) or anti-CREB or phosphor-CREB antibodies (S360) (both Merck). The secondary antibody used was chicken anti-rabbit horseradish peroxidase (Santa Cruz Biotech). Blots were developed with the use of enhanced chemiluminescence (GE Healthcare) and visualized with autoradiography film.
To detect cellular localization of NF-kB, cells were fractionated using REAP (rapid, efficient, and practical) (93 (link)) and proteins detected using the following antibodies: anti-NF-κB (Abcam, Inc.), anti-p84 (Thermo), and anti-GAPDH (Millipore). Secondary antibodies used were chicken anti-rabbit and bovine anti-mouse horseradish peroxidase (both Santa Cruz Biotech).
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2

Protein Extraction and Western Blot Analysis

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Total protein was collected by lysing adherent cells with RIPA buffer (Sigma) supplemented with phosphatase and protease inhibitor cocktail (Thermo Fisher). For nuclear protein extraction, nuclear lysates were isolated with an NE-PER Nuclear and Cytoplasmic Extraction Reagents Kit (Thermo) with phosphatase and protease inhibitor cocktail contained. Protein concentration was measured using the Bradford reagent (Bio-rad). Equal amount of protein was loaded for immunoblotting. After electrophoresis, the protein was transferred to polyvinylidene difuoride transfer membrane (PVDF) followed by 5% non-fat milk blocking buffer and incubated overnight with primary antibodies. After washing with TBST (TBS with 0.1% Tween), anti-mouse or anti-rabbit second antibodies conjugated with horseradish peroxidase-conjugated (HRP) were used to probe the membranes. Samples were developed by Chemiluminescent Substrate (Thermo Fisher) and exposed by Odyssey Imaging Systems (LI-COR). Densitometry was performed using ImageJ software (National Institutes of Health) and samples were normalized to internal controls. Primary antibodies used in this study are anti-ATM (Novus, NB100–104), anti-p84 (Thermo Fisher, PA4–27816), anti-LDHA (Cell Signaling, 2012S), anti-c-Myc (Abcam, 32072) and anti-GAPDH (Abcam, Ab9484).
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