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15 protocols using ml141

1

Pharmacological Inhibition of Cell Mechanics

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Pharmacological inhibitors were added to cell media 10 minutes before time-lapse microscopy experiments. The concentrations used for the inhibitors are: 100 nM Latrunculin A (Tocris Bioscience, actin polymerization inhibitor), 70 μM NSC 23766 (Tocris Bioscience, Rac 1 inhibitor), 50 μM CK 666 (Sigma, Arp 2/3 inhibitor), 20 μM ML141 (Tocris, Cdc 42 GTPase inhibitor), 20 μM SMIFH2 (Sigma, formin inhibitor), 30 μM fascin-G2 (Xcess Biosciences Inc., fascin inhibitor), 50 μM Y-27632 (Sigma, ROCK inhibitor) 25 μM ML-7 (Tocris, myosin light chain kinase inhibitor), 2 μg/ml CD29 Monoclonal Antibody TS2/16 (Life Technologies, β1-integrin activator), and 5 μg/ml monoclonal β1-integrin-blocking antibody (Abcam, P5D2). For HT-1080 cell detachment studies, cells were seeded on fast and slow-relaxing gels and allowed to spread overnight. 10 μg/ml monoclonal β1-integrin-blocking antibody was added to media and live-cell imaging started. Images were acquired every 2 minutes for 12 hours.
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2

Pharmacological Modulation of Actin Dynamics

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Blebbistatin (Sigma) and β-cyclodextrin (Sigma) were used at a final concentration of 20 and 250 μM respectively. ML141 (TOCRIS bioscience, Bristol, UK) was used at a final concentration of 10 μM (for low concentration experiments) and 30 μM (for high concentration experiments); EHT1864 (TOCRIS) was used at a final concentration of 10 μM. All inhibitors used were added after about 60–90 min of imaging, and the acquisition continued for at least 90 min after addition, at the conditions described in paragraph Live Cell Imaging.
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3

Inhibitors of Actin Dynamics in Cell Biology

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All ligands, chemical compounds, and inhibitors used in this manuscript were cell biological grade: EGF (Sigma-Aldrich, cat# E9644), NH4Cl (Sigma-Aldrich, cat# A0171), NSC23766 (TOCRIS, cat# 2161), Casin (TOCRIS, cat# 5050), ZCL278 (TOCRIS, cat# 4794), ML141 (TOCRIS, cat# 4266), PBP10 (Calbiochem, cat# 529625), Rapamycin (Sigma-Aldrich, cat# S-015), U0126 (Sigma-Aldrich, cat# 19–147), Quercetagetin (Calbiochem, cat# 551590), Afatinib (Selleckchem, cat# S1011), 5-(N,N-Dimethyl)-amiloride hydrochloride (DMA, Sigma-Aldrich, cat# A4562), 5-(N-ethyl-N-isopropyl)-amiloride (EIPA, Cayman Chemical Company, cat# 14406), Wiskostatin (TOCRIS, cat# 4434), 187-1, N-WASP inhibitor (TOCRIS, cat# 2067), CK869 (TOCRIS, cat# 4984), CK666 (TOCRIS, cat# 3950), Cytochalasin D (TOCRIS, cat# 1233), and LY294002 (Sigma-Aldrich, cat# L9908).
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4

Cdc42 Inhibitor Injection in Mice

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Five male BALB/c mice were i.p. injected with 100 μl ML-141 (selective inhibitor of Cdc42, 1 mg/ml in 30% dimethylsulfoxide-saline, Tocris Bioscience, Bristol, UK) daily for 3 weeks.37 (link), 43 (link), 44 (link) Five blank control mice and five DMSO control mice were i.p. injected with 100 μl saline and 30% dimethylsulfoxide-saline respectively everyday for 3 weeks. Urine of all mice was collected weekly before killed.
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5

Investigating Legionella Infection Pathways

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Anti-Legionella antibody was from Public Health Ontario and anti-VipA antibody was generously provided by Dr. H Shuman (University of Chicago, USA). pSrc (Y416), total Src, total Akt antibodies were from Cell Signaling (Danvers, MA, USA) and the pAkt (S743) antibody was from ThermoFisher (Life technologies, Carlsbad, CA, USA). Anti-calnexin antibody was from BD biosciences (Mississauga, ON, Canada). FuGENE (HD) was from Promega Biosciences (Madison, WI, USA).
The following inhibitors were used in this study: PP2 (25 μM, Tocris) (Hanke et al., 1996 (link)), Ly294002 (100 μM, Sigma) (Vlahos et al., 1994 (link)), membrane permeable C3 transferase (0.5 μg/mL, Cytoskeleton Inc.) (Ridley and Hall, 1992 (link)), ML141 (20 μM, Tocris) (Surviladze et al., 2010 ), Blebbistatin (200 μM, Sigma) (Straight et al., 2003 (link)), Nsc23766 (50 μM, Tocris) (Gao et al., 2004 (link)), ROCK (1 μM, Millipore) (Narumiya et al., 2000 (link)), SMIFH2 (25 μM, Millipore) (Rizvi et al., 2009 (link)), CK-666 (80 μM, Sigma) (Nolen et al., 2009 (link)).
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6

Integrin Signaling Antibody Protocol

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Anti-α2-integrin (sc-74466), anti-β-Catenin (sc-59737) and anti-RhoGDI (sc-373724) antibodies were from Santa Cruz Biotechnology. Anti-β1-integrin (AB1952), anti-active-β1-integrin (12G10), anti-α3-integrin (MAB2290), anti-p-Src (Y418; 07-909), anti-Src (GD11), anti-GAPDH (MAB374) and anti-GFP (MAB1083) antibodies were from Merck. Anti-p-Shp2 (Y542; 3751) and Shp2 (3752) antibodies were from cell signalling. Anti-E-cadherin (ab1416) and anti-laminin-β1 (ab44941) antibodies were from Abcam. Anti-vinculin (hVIN-1), anti-phosphotyrosine (4G10) and anti-HSC-70 (N69) antibodies were from Sigma-Aldrich. Anti-α4 integrin (MAB1354) was from R&D Systems. Anti-α5-integrin (eBioSAM-1) antibody was from eBioscience. Anti-p-RhoGDI (Y156; OAA100735) antibody was from Aviva Systems Biology. Anti-laminin-α3 (MAB21441) was from Novus Biologicals. Anti-Cdc42 (ACD03) antibody was from cytoskeleton. Anti-mouse horseradish peroxidase (HRP) and anti-rabbit HRP were from Dako. Anti-mouse Alexa 488 and Alexa 568, anti-rabbit Alexa 488 and Alexa 568, Sulfo-NHS-LC-biotin and phalloidin Alexa 647 were all obtained from Thermofisher. BTT-3033, PP2 and ML141 were from Tocris/Biotechne (Bristol, UK); shp099 was from Millipore. α2-integrin and control shRNA vectors were from Sigma-Aldrich. Calyculin A and protease inhibitor cocktail 1 were obtained from Calbiochem. Puromycin was obtained from GE Healthcare.
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7

Small Molecule Inhibitors for Oocyte Cytoskeleton

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The following small molecule inhibitors were used: ML-141 (5 µM; Tocris), ML-7 (15 µM; Tocris), Wortmannin (1 µM; Echelon biosciences), IPA-3 (1 µM; Tocris), BDP9066 (1 µM; Aobious), CK-666 (100 µM; Sigma-Aldrich), and Y-27632 (50 µM; Merck Millipore). An equivalent amount of DMSO was used for controls. Peptide-18 (Merck Millipore) was recovered in water at a stock concentration of 1 mg/ml and microinjected in the oocyte cytoplasm. In our preliminary experiments, we consistently noticed that oocytes cultured in media containing BSA required higher concentrations of inhibitors to obtain a full inhibition of the P-MRLC ring when compared with oocytes cultured in media in which BSA was substituted for by poly(vinyl alcohol) (Sigma-Aldrich). Therefore, experiments involving inhibitor treatments were performed in homemade BSA-free M16 medium supplemented with 0.05% poly(vinyl alcohol). However, fertilization experiments involving BDP9066 were performed using commercial HTF medium, which contains 4 mg/ml BSA (Merck Technical Services, personal communication).
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8

Human Bone Marrow MSC Culture and Angiotensin II Signaling

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Human bone marrow MSCs were purchased from Cyagen Biosciences Inc. (Guangzhou, China). The cells were identified by detecting cell surface markers and the MSC multipotent potential for differentiation toward the adipogenic, osteogenic, and chondrogenic lineages; cells were maintained as described previously [19 (link)]. Cells were passaged every 3–4 days using 0.25% trypsin–EDTA (Gibco) when they reached approximately 80% confluence and were used for the experimental protocols between passages 5 and 10 [20 (link)].
For the Ang II treatments, MSCs were serum starved for 6–8 h, and different concentrations of Ang II were added for 24 h or as indicated in the figures. To inhibit the activities of AT1R, AT2R, FAK, RhoA, Rac1, and Cdc42, cells were pretreated with AT1R antagonist Losartan (5 μM; Sigma-Aldrich, St. Louis, MO, USA), AT2R antagonist PD-123319 (5 μM; Tocris Biosciences, Bristol, UK), FAK inhibitor PF-573228 (5 μg/ml; Tocris Biosciences), RhoA inhibitor C3 transferase (5 μg/ml; Cytoskeleton, Denver, CO, USA), Rac1 inhibitor NSC23766 (50 μM; Tocris Biosciences) [21 (link)], or Cdc42 inhibitor ML141 (5 μg/ml; Tocris Biosciences) for 30 min.
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9

Effects of Cdc42 Inhibition on Cell Signaling

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Dobutamine (β1 adrenergic receptor partial agonist, Sigma, D0676) was used at 10μM, Alexa Fluor 488-Transferrin (Life Technologies T13342) was used at 20μg/mL, GDC-0941 (called ‘PI3Ki’ in this study, Symansis SYG0941) was used at 5 to 20nM; AS19499490 (called ‘SHIP2i’ in this study, Tocris 3718) was used at 0.5 to 10μM; ML141 (Cdc42 allosteric inhibitor, called ‘CDC42i 1’ in this study, Tocris 4266) was used at 10μM and secramine (Cdc42 inhibitor, called ‘CDC42i 2’ in this study, was a kind gift from T. Kirchhausen (Harvard Medical School) and the Hammond lab (U. of Louisville) and was synthetized by Bo Xu and GB Hammond and was used at 10μM.
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10

Inhibitors of Protein Prenylation Pathways

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The geranylgeranyl transferase I inhibitor GGTI-286, the farnesyl transferase inhibitor FTI-276, the cell permeable IkB kinase inhibitor peptide and its inactive control peptide, the NF-kB inhibitor SN50, the SN50M inactive control peptide, the Rac inhibitor NSC23766, the Rho-associated protein kinase (ROCK) inhibitors, Y- 27362 and H1152, and fluvastatin were purchased from Calbiochem (San Diego, CA, USA). Atorvastatin, mevalonate, squalene, geranylgeranyl pyrophosphate (GGPP), farnesyl pyrophosphate (FPP), Bay 11–7082 were purchased from Sigma-Aldrich (St. Louis, MO, USA). The Cdc42 inhibitor, ML141, was purchased by TOCRIS (Bristol, UK). Human recombinant DKK-1 was from R&D Systems (Minneapolis, MN, USA). Antibody against RAP1A was purchased from Santa Cruz Biotechnology Inc. (Dallas, Texas, USA).
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