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105 protocols using p 2000

1

Non-invasive Myotube Surface Imaging

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Surface structures of the differentiated myotubes cultured on the PEDOT/MWCNT sheet were obtained using the SICM nano-imaging technique43 . SICM images were obtained with the XE-Bio System (Park Systems). Myotube samples were embedded in phosphate-buffered saline (PBS) solution and placed on an x-y flat scanner stage (XE-Bio System) mounted on an inverted microscope (IX71, Olympus). The SICM probe glass nano-pipette (inner diameter of ~100 nm) was fabricated from borosilicate glass tubing (Warner Instruments) using a CO2-laser-based micropipette puller (P-2000, Sutter Instruments, CA) and filled with PBS electrolyte solution. Using the approach-retract scanning (ARS) or hopping modes of SICM imaging43 , 3D cell surface images of the live myotubes were successfully obtained in a non-invasive manner.
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2

Peptide Analysis on Orbitrap Q Exactive HF-X

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The peptides were analyzed on an Orbitrap Q Exactive HF-X (Thermo Fisher Scientific) mass spectrometer coupled to an UltiMateTM 3000 RSLCnano system (Thermo Fisher Scientific). A 15-cm-long LC column (i.d. 150 μm) packed with 1.9 μm C18 packing particles was used for peptide separation. The column was pulled using a micropipette puller (P-2000; Sutter Instrument) for preparation of the nano-ESI tips with a ∼5 μm opening. The spray voltage was set at 2.3 kV. Because of the high direct current voltage applied, the operator should stay away from high voltage power to avoid danger. An 80-min gradient of 6–40% buffer B (80% acetonitrile with 0.1% formic acid) was used for peptide elution. MS measurements were performed either in data-dependent acquisition mode. The full MS scans were acquired from m/z 350 to 1550 at a resolution of 120,000 (at an m/z 200) with a target of 3e6 charges for the automated gain control and 20 ms maximum injection time. For higher energy collisional dissociation MS/MS scans, the normalized collision energy was set to 27%, the resolution was 15,000 at m/z 200, accumulated for a maximum of 30 ms, or until the automated gain control target of 2e4 ions was reached.
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3

Fused Silica Capillary Preparation

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Fused silica from Polymicro (TSP075365 for 75-μm ID, TSP100365 for 100-μm ID, or TSP150365 for 150-μm ID) was cut to 140 cm. Polyimide coating was removed by a Bunsen burner and the silica surface was polished with an ethanol-soaked tissue in the middle of the cut capillary at a width of 2 cm. An ES emitter tip was pulled with a laser puller (Sutter P2000) at the polished part of the capillary resulting in two empty capillary columns ready to be packed.
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4

Microinjection of Zygotes with Morpholinos

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Zygotes were prepared for microinjections with a membrane softening pretreatment. Embryos were exposed to a freshly made 1:1 solution of 1 M sucrose and 0.25 M sodium citrate for 20 s followed by three quick rinses with FSW (Meyer et al., 2010 (link)). Individual zygotes were pressure injected with quartz glass needles (QF100-70-10; Sutter Instruments) that were pulled using a micropipette puller (P-2000; Sutter Instruments). Needles were filled with a cocktail of 800 μM MO antisense oligonucleotides, nuclease-free water and a 1:10 dilution of 20 mg/ml red dextran reconstituted in FSW (Texas Red, Molecular Probes). The volume of microinjected MO cocktail was typically between 0.5 and 2% of the total embryo volume, as estimated from injection into an oil drop, and resulted in a final MO concentration of 4-12 µM. For rescue experiments, needles were filled with 100 ng/μl of Ct-Smad2/3 mRNA plus dextran, 100 ng/μl Ct-Smad2/3 mRNA 3′ 6×His tag plus dextran, or a combination of 100 ng/μl Ct-Smad2/3 mRNA with 800 μM MO plus dextran. Injected and uninjected animals from the same brood were raised in FSW containing 60 μg/ml penicillin and 50 μg/ml streptomycin in separate dishes, and compared to assess overall brood health. A brood was considered healthy if more than 90% of the uninjected animals developed normally.
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5

Zebrafish Xenograft Transplantation Assay

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Transplantation of ZMEL1 cells into 2dpf casper zebrafish larvae was performed as previously described (Heilmann et al., 2015 (link); Kim et al., 2017 (link)). Briefly, ZMEL1 cells were prepared by trypsinization, centrifuged at 300g for 3 minutes, and resuspended at a concentration of either 2.5x107 or 5.0x107 cells/mL in 9:1 DPBS:H2O (Gibco 14190-144). Cells were injected into the Duct of Cuvier of 2dpf casper or casper;kdrl-RFP (labeling the vasculature with RFP) fish using a Picoliter Microinjector (Warner Instruments, PLI-100A) with a glass capillary needle (Sutter, Q100-50-10) made on a laser-based needle puller (Sutter, P-2000). For mixing studies, ZMEL1-PRO and ZMEL1-INV differentially labeled with EGFP or tdTomato were mixed at a 1:1 ratio prior to injection. Fish with successful transplants based on the presence of circulating cells and/or cells arrested in the caudal vasculature were either used for time-lapse confocal microscopy (see “Zebrafish confocal time-lapse imaging”) or individually housed and followed by daily imaging on a Zeiss AxioZoom V16 fluorescence microscope.
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6

Meniscus-Guided Printing of PB Micro-Patterns

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PB micro‐patterns were printed using a meniscus‐guided printing approach. Glass micropipettes with IDs of 2, 10, 20, and 30 µm were obtained using a pipette puller (P‐2000, Sutter Instruments). The ink was filled through the back of the micropipette using capillary forces with no applied pressure. Indium tin oxide‐coated glass with a resistance of 4–6 Ω cm−2 (AMG Tech) was used as the printing substrate. During the printing process, the pipette motion corresponding to the printed paths was determined using parameterized G‐code scripts and controlled by three‐axis stepping motors with 250 nm positioning accuracy. The nozzle motion corresponds to the printed paths. The printing process was observed in situ using a high‐resolution monitoring system consisting of an optical objective lens (50 ×, Mitutoyo) and complementary metal oxide semiconductor camera (BFS‐U3_200S6C, Flir). The printed patterns were treated thermally on a hot plate for 9 s at 120°C for reduction.
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7

In Vivo Xenograft and Zebrafish Metastasis Assays

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The Institutional Animal Care and Use Committee of Xuzhou Medical University provided full approval for this research (IACUC-2202049). BALB/c nude mice were acquired from GemPharmatech, Inc. (Nanjing, China). BALB/c nude mice were obtained from GemPharmatech, Inc. (Nanjing, China). The participants were randomly divided into two groups (n = 5, with no blinding performed in either group). Cells were injected subcutaneously into the axilla of the nude mice, with each mouse receiving a dosage of 1 × 107 cells. The maximum diameter of the tumor was measured every 2 days after implantation. After 12 days, the mice were euthanized, and the tumor was removed and weighed. AB line zebrafish were acquired from China Zebrafish Resource Center (Wuhan, China). They were randomly divided into two groups (n = 16, no blinding was performed, respectively). After A549 cells incubated with CFSE (Thermo Fisher, Waltham, MA, USA), xenograft perivitelline injection were conducted in 2 day-post-fertilization zebrafish via a Picoliter Microinjector (PLI-100A; Warner Instruments, Hollister, MA, USA) with a glass capillary needle (Sutter, Q100-50-10) made on a laser-based needle puller (P-2000; Sutter, Sacramento, CA, USA). Observed cell extravasation in the caudal vasculature at 3 days post-transplant and imaging on a Zeiss AxioZoom V16 fluorescence microscope.
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8

Micropipette Calibration for Droplet Volume

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Volumetric changes in the droplets were used to characterize the injection volume of the micropipette. The micropipettes were routinely fabricated from glass capillary tubes (BF100-50-15, Sutter Instruments) using a programmable laser-base pipette puller (P-2000, Sutter Instruments). The tip diameter of the fabricated micropipette was measured by scanning electron microscopy, and micropipettes with a tip inner diameter of 0.5 μm were selected. After back filling with 1 μL of deionized water, the micropipette was fixed to the microrobot and connected to the microinjector, which controls the injection pressure and time. The pipette tip was then immersed into the mineral oil and water droplets were dispensed by adjusting the injection pressure or time. Since the droplets formed were very small, multiple injections were required to produce visible size changes in the droplets. Droplets were assumed to be spherical, and their volumes were determined by measuring the area of each droplet from captured images (See Supplementary Fig. 4a). The amount of injected substance could be determined by quantitatively injecting a certain volume of a substance with known concentration. Once the calibration results of injection volume versus injection pressure and time were obtained, the calibrated micropipette could be used for cell injection.
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9

SICM for High-Resolution Cell Imaging

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SICM images were obtained with a commercial SPM (NX- 12 system, Park Systems Corp, Suwon, Korea). This system has a Scanning Probe Microscope system fixed on top of an inverted optical microscope (Eclipse Ti, Nikon Corp., Tokyo, Japan) enabling to view the bottom side of the sample and acquire SICM images simultaneously. The SPM system has a 100 µm × 100 µm xy flat scanner, and a separate SICM head with a 15 µm z scanner. The SICM probe consists of a glass pipette filled with electrolyte, and an Ag/AgCl pipette electrode inserted into it. The SICM probe is fabricated from borosilicate capillaries (inner diameter 0.58 mm, outer diameter 1.0 mm, Warner Instruments, Hamden, CT, USA) using a CO2-laser-based micropipette puller (P-2000, Sutter Instruments, Novato, CA, USA); the inner and outer diameters of the tip of the SICM probe are approximately 80 nm and 160 nm, respectively. In the present study, the surface profiles of fixed single cell images were primarily obtained using the Approach-Retract Scanning (ARS) mode of the SICM to ensure non-destructive high resolution surface images.
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10

Nanopipette Fabrication and Filling

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Quartz
capillaries (Sutter)
with a 0.5 mm/0.3 mm (inner/outer) diameter were sonicated in ethanol
for 10 min before drying under a nitrogen stream and baking at 60
°C to remove residual ethanol. Capillaries were pulled to a nominal
inner diameter of 150 nm using a laser-assisted puller (Sutter P-2000).
The expected morphology and pore diameter were confirmed by SEM; see
the SI for images and the pore-size distribution.
Back-end of capillaries were submerged in to desired salt solution
and placed in a vacuum desiccator to induce capillary filling. Filled
capillaries were inserted into a holder (Axopatch Holder with Suction
Port), which could be mounted to an Axopatch head stage.
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