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3 protocols using phospho ddr2 y740

1

DDR1 and Wnt Pathway Regulation

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All media and FBS were purchased from Thermo Fisher Scientific (Waltham, MA); proMMP-13 enzyme-linked immunosorbent assay (ELISA) kits from R&D systems (Minneapolis, MN); Phosphatase Inhibitor Cocktail [#5870; Cell signaling, Danvers, MA, USA] and protease inhibitor cocktail (#539131, Calbiochem, San Diego, CA, USA); The Wnt signaling inhibitor CCT031374 hydrobromide (cat. no. 4675/10, R&D Systems, Minneapolis, MN), antibodies to β-Catenin (D10A8; XP® Rabbit mAb #8480), α-Tubulin (11H10; Rabbit mAb#2125), Akt (#9272); Phospho-Akt (Ser473) (193H12; Rabbit mAb #4058), Phospho-DDR1 (Tyr792; #11994) and total DDR1 (D1G6; XP® Rabbit mAb #5583) from Cell Signaling Technology (Danvers, MA 01923); the antibodies to human Phospho-DDR2 (Y740; #1119D) and human DDR1 (AF2538) from R&D system (Minneapolis, MN); HRP-conjugated rabbit anti-goat (#305-036-047), HRP-conjugated goat anti-rabbit (#111-035-144), AffiniPure goat anti-human lgG, F(ab’)2 fragment specific (#109-005-097) and peroxidase affinipure goat anti-human lgG(H+L; #109-035-088) from Jackson ImmunoResearch (West Grove, PA, USA). Human DDR1-full length [19 (link)] and DDR1-Fc [20 (link)] were kind gifts from Dr. Friedemann Kiefer, Max Planck Institute for Molecular Biomedicine, Germany, and from Birgit Leitinger, National Heart and Lung Institute, Imperial College London, London UK, respectively.
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2

Protein Expression Analysis by Western Blot

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Total protein concentration was determined with the BCA Protein Assay Kit (Beyotime). The protein extracts were separated by 10% SDS-PAGE and transferred to polyvinylidene difluoride membranes (Millipore). Nonspecific protein binding was achieved by incubation of the membranes with 5% dried skim milk for 1 h, and the membranes were incubated overnight with antibodies against CARM1 (1 : 1000, Abcam), histone H3R17 dimethylation (1 : 800 Millipore), p15 (1 : 1000, Abcam), p16 (1 : 1000, Abcam), p21 (1 : 800, Abcam), TERT (1 : 500, Abcam), DDR2 (1 : 500, R&D), phospho-DDR2 Y740 (1 : 500, R&D), and β-actin (1 : 1000, ABclonal). The next day, the membranes were incubated with horseradish peroxidase-conjugated secondary antibodies (1 : 5000, ABGENT) for 1 h. The results were visualised by the Chemiluminescent HRP Substrate (Millipore) and recorded by a Bioshine ChemiQ imaging scanner (Bioshine).
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3

Evaluating Protein Expression and Modifications via Western Blotting

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Western blotting was performed as previously described(74 (link)). Nuclear and cytoplasmic fractions of cell lysates were isolated following manufacturer’s protocol (#78835, ThermoFisher). Protein concentrations were quantified using BCA assay (#23227, ThermoFisher). Around 20 μg of protein was loaded on 8% SDS-PAGE gels, transferred to PDVF membrane, blocked with 5% non-fat milk in 1xTBST, incubated with primary antibodies overnight at 4°C. Primary antibodies: DDR2 (1:1000, PA1879, Boster); phospho-DDR2 Y740 (1:1000, MAB25382, R&D systems); α-tubulin (1:1000, sc-32293, Santa Cruz); β-tubulin (1:1000, #2128, Cell Signaling); GAPDH (1:2000, sc-25778, Santa Cruz); Twist1/2 (1:1000, GTX127310, GeneTex); Snail (1:1000, #3895, Cell signaling; Lamin A/C (1:1000, #4777T, Cell signaling); TAZ (1:1000, 560235, BD biosciences); YAP (1:1000, sc376830, Santa Cruz); YAP (1:1000, #14074, Cell Signaling); E-cadherin (1:1000, 610404, BD biosciences). For immunoprecipitation, Phospho-(Ser/Thr) Phe Antibody (1:100, #9631, Cell Signaling).
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