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Tecnai tem

Manufactured by Thermo Fisher Scientific
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The Tecnai TEM is a transmission electron microscope (TEM) manufactured by Thermo Fisher Scientific. It is designed to provide high-resolution imaging and analysis of materials at the nanoscale level. The core function of the Tecnai TEM is to enable the observation and characterization of the internal structure and composition of a wide range of samples, including materials, biological specimens, and nanostructures.

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27 protocols using tecnai tem

1

Multimodal Characterization of Biomolecules

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Transmission electron microscopy (TEM) images were acquired using Tecnai TEM (FEI Tecnai G2 F20, Ontario, Canada). The ultraviolet-visible (UV-vis) spectrum was recorded using a Cytation 5 spectrophotometer (BioTek Instruments, Inc., Ontario, Canada). Antibody-gold ion conjugates were monitored by Fourier transform infrared spectroscopy (FT-IR spectroscopy) (FT/IR6300, JASCO Corp., Tokyo, Japan). Zeta potential was measured with Zetasizer Nano ZS (Malvern Instruments Ltd., Worcestershire, UK).
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2

Advanced Microscopy Techniques for Material Analysis

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SEM was performed on a Carl Zeiss Merlin SEM using the in-lens detector at 1 kV voltage. STEM tomography was performed on an FEI Tecnai TEM following a previously reported procedure (37 (link)). A series of STEM images were acquired at tilt angles ranging from −68° to +68° and reconstructed into a full 3D volume using Inspect 3D software. 2D slices and cross-sections were then extracted from the 3D volume using ImageJ. Film thickness measurements were performed on a JA Woollam alpha-SE ellipsometer at 70° incident angle, and the data were fitted using the Cauchy model.
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3

Ultrastructural Analysis of Mitochondria

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To demonstrate the ultrastructure of mitochondria, the heart tissue was cut into a 1 × 1 × 1 mm-sized patch and fixed with ice-cold 2.5% glutaraldehyde. After washing with PBS, all samples were fixed by 1% OsO4 and embedded in epoxy resin. Ultrathin sections were stained with uranyl acetate and lead citrate. Tecnai TEM (FEI, Hillsboro, OR, USA) was used for observation. All analyses were performed blind to the observer.
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4

Seed-Mediated Synthesis of Platinum Nanoparticles

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PtNPs were prepared following a previously reported seed-mediated synthesis.39 (link) Briefly, 7.76 mL of a 0.2% (w/v) solution of H2PtCl6 were added to 100 mL of gently boiling H2O. After 1.0 min, 2.37 mL of a solution containing sodium citrate (1%, w/v) and citric acid (0.05%, w/v) were added and the solution was allowed to boil for an additional 30 s. Next, 1.18 mL of a solution containing NaBH4 (0.08%, w/v), sodium citrate (1%, w/v), and citric acid (0.05%, w/v) were added, and boiling was continued for 10 min. After cooling to room temperature, 3–4 nm Pt seed NPs were obtained.
A 1.0 mL aliquot of the PtNP seed solution was added to 29.0 mL of H2O at room temperature. With stirring, 0.023 mL of a 0.40 M H2PtCl6 solution and 0.50 mL of a solution containing 1% sodium citrate and 1.25% l-ascorbic acid was added. The solution was then heated to boiling at the rate of 10 °C min–1. The total reaction time was 30 min. After cooling to room temperature, the solution was transferred to a 35 mm dialysis sack (12 000 Da MWCO, Sigma-Aldrich) and submerged in 4 L of DI H2O for 24 h to remove excess salts. The PtNPs were characterized by transmission electron microscopy (TEM, FEI Tecnai TEM), and found to have an average diameter of 22 ± 4 nm. A representative TEM image and a histogram showing the NP size distribution are provided in the ESI (Fig. S1).
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5

Structural Analysis of αB-AXA Fibrils

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Negatively stained samples were prepared similarly for all specimens for EM analysis by placing 3 μL drops of the protein solution onto carbon-coated copper mesh grids at approximate monomer concentrations of 720 nM. After a brief incubation period, excess solution was blotted away on filter paper, washed three times with water, stained with 0.75% uranyl formate (SPI-Chem), and subsequently dried under a laminar flow. Electron micrographs were obtained using a 120 KeV Tecnai TEM (FEI) with a BMEagel detector recorded at a nominal 49,000 × magnification with calibrated pixel sizes of 4.37 Å pixel−1.
Initial structural analysis of αB-AXA fibrils was performed on EM images of negatively stained specimens. Preliminary fibrillar crossover dimensions were obtained by direct measurements using the Fiji software73 (link). For initial 2D and 3D analysis, individual filament segments were selected using the ‘helixboxer’ tool in EMAN274 (link) and extracted using a box size of 88 pixels and a 90% box overlap. Extracted particles were imported into Relion75 (link) for class averaging and a de novo initial model was generated in EMAN2.
For cage-like assemblies of αB-AXA, particles were automatically picked using the threshold picking tool in EMAN2 and extracted using a box size of 84 pixels before being imported into Relion for 2D class averaging.
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6

Transmission Electron Microscopy Lamella Preparation

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TEM samples were prepared using lamella lift out procedure using dual beam FIB (FEI Helios) and mounted on copper half grids. The TEM was done using FEI Tecnai TEM using field emission gun operating with an accelerating voltage of 200 kV.
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7

Structural Analysis of CorA by Cryo-EM

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CorA was purified by SEC and diluted to 0.1 μM in appropriate buffers containing 1 mM EDTA or 40 mM Mg2+. Copper grids were neutralized with an Easiglow glow discharger (Agar Scientific). 3 μl of sample was applied to the grid and incubated for 30 s. The grid was blotted onto a filter paper from the edge, and 3 μL of 2% uranyal formate was added immediately and incubated for 30 s. The staining procedure was repeated two more times. After the final staining, the grid was left to dry for ten minutes. EM data were acquired on a Tecnai TEM (FEI, Thermo Fischer scientific) at Aarhus University, Denmark. The micrographs were processed by XMIPP to *.mcp files, and particle picking, 2D class averages and 3D model refinement was done in Relion 3.0. Statistics for the 3D refinement are given in Table 1.
Molecular graphics were performed with UCSF Chimera, developed by the Resource for Biocomputing, Visualization, and Informatics at the University of California, San Francisco, with support from NIH P41-GM103311 (Pettersen et al., 2004 (link)).
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8

Ultrastructural Analysis of Mandibular Cartilage

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Three tissue samples in each subgroup were selected for TEM investigations. Fresh small tissue blocks (1 mm3 volume) from the mandibular condylar cartilage were fixed in a solution containing 2.5% glutaraldehyde in 0.1 mol/L cacodylate buffer (pH 7.4) at room temperature. The specimens were decalcified in EDTA for 10 days, rinsed with phosphate buffered saline (PBS), and fixed in 2% osmium tetroxide (OsO4) in 0.1 mol/L cacodylate buffer (pH 7.4) for 2 hours. The material was then dehydrated through a graded series of ethanol and propylene oxide. Ultrathin sections (75-nm thick) were stained with uranyl acetate and lead citrate and examined using a Tecnai TEM (FEI, USA) operated at 80 kV.
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9

HCoV-OC43 Infection and Mitochondrial Morphology

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BEAS-2B cells infected with HCoV-OC43 for 72 hours were fixed in 2.5% glutaraldehyde followed by osmium tetroxide. After fixation, the cells were processed through ascending grades of ethanol, propanol and EMbed 812 epoxy resin. Ultrathin sections were cut and stained with Reynold’s lead citrate and 5% uranyl acetate. The sections were imaged using an FEI Tecnai TEM (Hillsboro, Oregon). Mitochondrial diameter was measured in control and infected cells (n = 40 each) using Gatan DigitalMicrograph 3.4 software and analyzed using Welch’s two sample T-test.
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10

Serial Sectioning and Electron Tomography

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Serial sections with thickness of 200 nm or 250 nm were prepared and collected on copper slot grids (2 × 0.5 mm oval slots) with carbon supports, on which overlaid with 10 nm fiducial gold pretreated with BSA. The grids were stained with Reynold’s lead citrate before the second layer of fiducial gold was applied. The specimens were imaged with FEI Tecnai TEM operating at 200 kV and the micrographs were recorded with a Gatan UltraScan 1000 CCD at 0.87 nm/pixel (9,600x). Tilt series from −60° to +60° with 2° increments were acquired using Xplore3DTM (FEI). Double tilt series were collected using a double tilt holder (Model 2040 Dual-Axis Tomography Holder, Fischione). Serial tomograms were reconstructed, joined using IMOD, and segmented using Avizo 3D software (FEI).
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