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16 protocols using syncbox

1

Simultaneous EEG-fMRI Acquisition Protocol

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For those participating in the third session, simultaneous EEG and fMRI were recorded using the parameters already described for the EEG and fMRI stand-alone sessions. Additionally, a second ECG and pulse and breathing were acquired with a supplementary device (Expression MR-Monitor, PHILIPS Corporation, Massachusetts, United States) to correct for cardiovascular artifacts. The timing of the EEG and the MR scanner was synchronized using a SyncBox (Brain Products, Munich, Germany), and triggers occurring at each radiofrequency pulse (RF-pulse) were passed from the MR to the EEG. All settings followed the protocol provided by the EEG manufacturer (sampling rate = 5,000 Hz; resolution: 0.5 μV; low cutoff = 10 s; high cutoff = 250 Hz; series resistor values = 10 kΩ) (Brain Products, Munich, Germany). During the acquisition, the helium compressor was turned off to avoid vibrations and, therefore, electrical noise for optimizing data quality. An overview of the complete setup is sketched in Supplementary Figure 1.
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2

High-Density EEG Acquisition in MRI

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Continuous EEG data were collected from 32 sites using BrainAmp MR plus, with high-input impedance specifically designed for recordings in high magnetic fields (BrainProducts, Munich, Germany). We used sintered Ag/AgCl ring electrodes with 5 kΩ resistors embedded in an electrode cap according to the 10–20 system (Falk Minow Services, Herrsching, Germany). An electrode was placed on the lower back to monitor electrocardiograms (ECG). Electrode impedances were kept below 10 kΩ. The nonmagnetic, battery powered, EEG amplifier was placed behind the MRI head coil and stabilized with sandbags. The subject's head was immobilized using cushions. EEG data were transmitted via a fiber optic cable to a BrainAmp USB Adapter that synchronized the EEG acquisition clock to the MRI master clock via a SyncBox (BrainProducts) before transferring data via USB to a laptop computer placed outside the scanner room.
All 32 channels were recorded with FCz as reference and AFz as ground to minimize the distance between reference and recording sites and to prevent amplifier saturation. The data were recorded with a bandpass filter of 0.01–250 Hz and digitized at a rate of 5 kHz with 0.5 μV resolution (16 bit dynamic range, 16.38 mV).
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3

Simultaneous EEG and fMRI Acquisition Protocol

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Subjects performed the task inside the MRI scanner (GE Signa 3.0 T) with simultaneous EEG and MRI recordings. The sampling clocks of the EEG and MRI systems were synchronized by means of the Syncbox (BrainProducts).
EEG signals were collected using a 64-channel fMRI-compatible Neuroscan Maglink System with Ag/AgCl electrodes placed according to the international 10/20 electrode placement standard. Vertical and horizontal electrooculogram (EOG) were recorded with electrodes above and on the outer canthi of the left eye. The electrocardiograms (ECGs) were recorded with a pair of electrodes above and below the left sternum. EEG data were sampled at 1,000 Hz and the electrode impedances were kept under 10 KΩ throughout the experiment. The amplifier gain was 150 and the analogic bandpass filter was set at 0–200 Hz. The AFz electrode site served as the ground electrode and an electrode between Cz and Pz served as reference.
Functional MR images were acquired with a gradient echo planar imaging (EPI) sequence with the following scanning parameters: TR = 2,000 ms; TE = 30 ms; FA = 90°; FOV = 240 mm; matrix size = 64 × 64; voxel size = 3.75 × 3.75 × 4.4 mm3; 35 slices. The structural images were acquired with a high-resolution T1-weighted scan (voxel size = 1 × 1 × 1 mm3).
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4

MRI-compatible EEG data acquisition

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EEG data was recorded with an MRI-compatible cap equipped with carbon-wired Ag/AgCL electrodes (Braincap MR) from 64 scalp positions according to the international 10-10 system. The reference electrode was placed at FCz and the ground at AFz. An additional ECG electrode was positioned on the back to measure heart rate. An MRI-compatible EEG amplifier was used (Brain-Amp MR, Brain Products) with a sampling rate of 5000 Hz. This was positioned at the back of the scanner bore and connected using ribbon cables that were secured with sandbags. Impedance was kept below 10 kΩ for EEG channels and 5 kΩ for the ECG. EEG recordings were performed with Brain Vision Recorder Software (Brain Products) and timings kept constant using a Brain Products SyncBox to synchronize EEG with the MRI system clock.
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5

Simultaneous EEG-fMRI Acquisition Protocol

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EEG recordings were conducted with a 64‐channel MR‐compatible EEG system (Brain Products, Gilching, Germany; 0.1–250 Hz hardware band‐pass filter, ±16.38 mV recording range at a 0.5 μV resolution and 5 kHz sampling rate) and an EEG cap with ring‐type sintered silver chloride electrodes with iron‐free copper leads (EasyCap, Herrsching, Germany). Sixty‐one scalp electrodes were arranged based on the international 10–20 system with FCz as reference and ground electrode at AFz. In addition, two electrocardiogram (ECG) electrodes and one vertical electro‐oculogram (EOG) were recorded. An abrasive electrolyte gel (Abralyt 2000, Easycap, Herrsching, Germany) served to keep the impedances of all electrodes below 5 kΩ. The EEG‐sampling was synchronized to the gradient‐switching clock of the MR scanner, to ensure time‐invariant sampling of the image acquisition artifact (SyncBox, Brain Products, Gilching, Germany) (Anami et al., 2003 (link); Freyer et al., 2009 (link)).
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6

Multimodal Neuroimaging Acquisition Protocol

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In this study, fMRI data were acquired using a Siemens Verio 3.0 Tesla scanner (Siemens, Erlangen, Germany) with a standard 12-channel head coil. A gradient echo planar imaging sequence was used with the following parameters: 34 axial slices, repetition time (TR) = 2700 ms, echo time (TE) = 30 ms, flip angle = 90°, field of view (FoV) = 220 × 220 mm, matrix = 64 × 64, and thickness = 3.4 mm. The acquired voxel dimension was 3.4 × 3.4 × 3.4 mm.
EEG data were acquired with an MR-compatible EEG amplifier (BrainAMP MR, Brain Products, Munich, Germany) at a sampling rate of 5,000 Hz, using 64 electrodes in the extended 10–20 montage, plus one extra electrocardiogram electrode. The 64 electrodes included two electrodes monitoring eye movement, thus the remaining 62 electrodes were used for further analysis. An experienced specialist (L.G.) positioned the EEG caps on the subjects. To ensure valid standard positions, the electrode Cz was placed halfway between the nasion and the inion, and was right-left-centered. The reference was set at the mid-frontal position FCz, and the impedances were kept below 10 kΩ. The data were transmitted via fiber optics outside the scanner room. To facilitate the removal of MR-induced artifacts from the EEG data, the sampling clocks of the EEG and MRI systems were synchronized by the Sync box (Brain Products, Munich, Germany).
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7

Simultaneous EEG-fMRI Data Acquisition

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For simultaneous EEG-fMRI acquisition, we used MR-compatible 64 channel EEG amplifiers (Brain Products, GmBH, Germany), MR-compatible EEG cap (BrainCap MR, Falk Minow Services, Herrsching–Breitbrunn, Germany) with 63 10–20 system distributed scalp electrodes and ECG electrode. We collected 10,000 data points per TR by synchronizing the EEG data acquisition clock to the MRI scanner clock using Brain Products' SyncBox. EEG data were then digitized with a sampling frequency of 5 kHz, 0.5 μV resolution, with reference to FCz and within a DC-250 Hz frequency range. For all the EEG recordings, impedance at electrodes was <20 kΩ.
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8

Multimodal Brain Imaging Synchronization

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The study was conducted at the University Hospital of Freiburg (Department of Radiology). fMRI data acquisition and EEG recordings were initiated manually whereas visual presentation was initiated by a trigger code sent from the MR scanner. The EEG-amplifier hardware clock was synchronized with the timing of gradient switching during fMRI measurements (SyncBox; Brain Products, Gilching, Germany). Onsets of stimulation and echo-planar image (EPI) scans as well as the participant’s response were registered on a trigger channel of the EEG acquisition host.
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9

Simultaneous fMRI and EEG for Eye State Analysis

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All experiments were performed using a 3.0-T MR scanner (Trio, Siemens, Erlangen, Germany) to obtain echo-planar T2*-weighted image volumes (EPI).
In the fMRI experiment, a block design was used. Starting with closed eyes, the subjects had to alternately open and close their eyes every 27 s (20 blocks each, total time of <25 min). Instructions to open and close the eyes were given verbally via headphones. In total, 600 EPI images (voxel size = 3 mm × 3 mm × 3 mm, TR = 2.52 s, TE = 35 ms; 40 transaxial slices, covering the entire cerebrum and cerebellum) were acquired.
EEG recordings: The first fMRI experiment with subject #1 (Table 1) was recorded with a simultaneous EEG (63 ring electrodes within an MRI-compatible cap (BRAINCAP-MR, BrainProducts) at a sampling rate of 5000 Hz, using a BrainProducts SyncBox to synchronize the EEG and fMRI data. For MR artifact correction, the BrainVisionAnalyzer 2.0 Software (BrainProducts) was used. The timing of probable eye opening and closing was defined via manual inspection by an experienced neurologist. These onsets were used to define the exact timing of the eye state vector (referred to as predetermined eye state in Figs. 3, 4, 5).
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10

Simultaneous fMRI and EEG Acquisition

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The original study is presented in (Timmermann et al. 2023 (link)), however we summarize the relevant acquisition information here. Images were acquired in a 3T MRI (Siemens Magnetom Verio syngo MR B17) using a 12-channel head coil for compatibility with EEG acquisition. Functional imaging was performed using a T2*-weighted BOLD sensitive gradient echo planar imaging sequence with the following parameters: repetition time (TR) = 2000ms, echo time (TE) = 30ms, acquisition time (TA) = 28.06 mins, flip angle (FA) = 80°, voxel size = 3.0 × 3.0 × 3.0mm3, 35 slices, interslice distance = 0mm. Whole-brain T1-weighted structural images were also acquired.
EEG was recorded inside the MRI during image acquisition at 31 scalp sites following the 10–20 convention with an MR compatible BrainAmp MR amplifier (BrainProducts, Munich, Germany) and an MR-compatible cap (BrainCap MR; BrainProducts GmbH, Munich, Germany). Two additional ECG channels were used to improve heart rate acquisition for artifact minimization during EEG preprocessing. EEG was sampled at 5 kHz and with a hardware 250 Hz low-pass filter. EEG-MR clock synchronization was ensured using the Brain Products SyncBox hardware.
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