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17 protocols using xanthan

1

Cloning and Expression of Xanthanase from Microbacterium

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In previous work, a xanthan-degrading strain named Microbacterium sp. XT11 (China Center for Type Culture Collection CCTCC AB2016011) was isolated in the author’s laboratory [14 ]. In this work, the gene encoding the endotype xanthanase MiXen, and the gene fragment encoding its catalytic domain (MiXen-CD), were cloned from genomic DNA of Microbacterium sp. XT11. Escherichia coli DH10B and E. coli BL21 (DE3) were used in gene cloning experiments and for the expression of recombinant enzymes, respectively.
Microbacterium sp. XT11 was cultivated at 30 °C in xanthan medium (0.5 g/L glucose, 3 g/L yeast extract, 3 g/L xanthan (purchased from sigma), 0.8 g/L NaCl, 0.05 g/L K2HPO4, 0.70 g/L KNO3 and 0.025 g/L MgSO4·7H2O, pH 7.0). E. coli strains were grown at 37 °C in Luria–Bertani (LB) medium (5.0 g/L yeast extract, 10 g/L sodium chloride and 10 g/L tryptone, pH 7.0) [14 ].
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2

Melanoma and Fibroblast Cell Lines Evaluation

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Docetaxel powder (DTX) and lidocaine hydrochloride (LDC) were donated by Cristália Prod. Quim. Farm. Ltd.a (Itapira, SP, Brazil). Docetaxel trihydrate 20 mg mL−1 (DTXT-HYD) was kindly provided by Blau Pharmaceutica S.A. (Cotia, SP, Brazil). 18F-fluorodeoxyglucose (18F-[FDG]) was a gift from Cyclobras Ind. Com. Lab. Services Ltda (São Paulo, SP, Brazil). Pluronic F-68 (P68), Myristyl myristate (MM), Miglyol 812® (MG), chitosan (CHT), xanthan (XAN), DMEM medium, fetal bovine serum and 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) were supplied by Sigma-Aldrich (St. Louis, MO, USA). Deionized water (18 MΩ) was obtained from an Elga USF Maxima ultra-pure water purifier. Phosphate-buffered saline (PBS), dimethyl sulfoxide and ultrapure water are from Laborclin (Pinhais, PR, Brazil), Vetec (São Paulo, SP, Brazil) and Barnstead™, Thermo Scientific (Thermo Scientific, Waltham, MA, USA), respectively. Murine fibroblasts (NIH-3T3) and murine melanoma (B16-F10) cells were purchased from American type culture collection (ATCC, Manassas, VA, USA). Human melanoma (SK-MEL-103) and human keratinocytes (HaCaT) cell line were purchased from Memorial Sloan Kettering cancer center (New York, NY, USA and CLS cell lines Service GmbH (Heidelberg, Germany), respectively. All other reagents were of analytical grade.
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3

Development of Enteric Polymer-Coated Gelatin Capsules

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Gelatin (porcine, type A) was generously provided by Medana Pharma (Sieradz, Poland), Aquacoat CPD® (FMC Biopolymer, Philadelphia, PA, USA), a 30% aqueous pseudolatex dispersion of cellulose acetate phthalate (CAP) and cellulose acetate propionate (CAP 482-0.5), cellulose acetate butyrate (CAB 381-0.5) (Eastman Chemical, Kingsport, TN, USA), hypromellose phthalate (HPMCP(HP-55), hypromellose acetate succinate (HPMCAS) (Aqoat AS-MF and AS-HF, Shin-Etsu, Tokyo, Japan) were gifts from IMCD Polska (Warsaw, Poland). Eudragit L30 D-55, Eudragit L100, and Acryl Eze II (Evonik, Essen, Germany) were obtained from Evonik. Opadry Enteric (Colorcon, Budapest, Hungary) was provided by Colorcon. Aquarius Control ENA (Ashland, Covington, KY, USA) was received from Ashland. Glycerol (99.5%) was purchased from Chempur (Piekary Śląskie, Poland), polyethylene glycol (PEG-400), sorbitol, ί-carrageenan, gellan, and xanthan were purchased from Sigma Aldrich (Saint Louis, MO, USA). The compositions of certain complex products are specified further in Table 1.
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4

Pectin-based Polysaccharide Aerogel Synthesis

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High methoxyl pectin (hmP) (degree of esterification: 78%, CAS: 9000-69-5) was provided by Herbstreith & Fox, Germany. Alginic acid sodium salt (from brown algae, CAS: 9005-38-3), xanthan gum (CAS: 11138-66-2) and guar (CAS: 9000-30-0) were purchased from Sigma Aldrich, USA.
Blank polysaccharide aerogels were prepared as described in our previous paper3 (link), by dissolving either 0.4 g or 0.8 g of hmP and 0.4 g of alginate, xanthan and guar in 20 mL of water, respectively. 10% wt of absolute ethanol was added and the solutions were placed to moulds, where additional ethanol was added on the top of the solution for gel to set.
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5

Anaerobic Fecal Microbiota Immobilization

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For each fermentation experiment a fresh fecal sample from a different donor was used for the immobilization procedure. Fecal samples were collected from three healthy women, aged 71 (fermentation 1), 72 (fermentation 2) and 78 years (fermentation 3), who did not receive antibiotic treatment for at least three months prior to sample collection, and who did not consume probiotics on a regular basis.
Immediately after defecating, the fecal sample was transferred to a tube containing 5 mL of sterile, pre-reduced peptone water (0.1%, pH 7), placed in an anaerobic jar (Anaerojar, Oxoid, Hampshire, England), and transported and processed within three hours. Handling and encapsulation of the fecal microbiota into 1–2 mm gel beads composed of gellan (2.5% w/v), xanthan (0.25% w/v), and sodium citrate (0.2% w/v, Sigma-Aldrich Chemie GmbH, Buchs, Switzerland) was performed in an anaerobic chamber as previously described [21 (link)].
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6

Characterization of Polysaccharide Interactions

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CGM-lv, INM, KGM, and linear β-1,4-mannooligosaccharides were from Megazyme (Wicklow, Ireland); CGM-hv (locust bean gum), GG, xanthan from Xanthomonas campestris, Avicel (microcrystalline cellulose), and unmodified wheat starch were from Sigma-Aldrich (Darmstadt, Germany).
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7

Methacrylated Natural Polymers for Hydrogel Synthesis

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Natural polymers obtained from Sigma-Aldrich, Darmstadt, Germany and methacrylated using the protocol described in [65 (link)] were used to obtain the hydrogels: high-molecular-weight chitosan (CsMa, Mw = 310.000–375.000 Da, 21.2% degree of methacrylation); gelatin (GelMa, from porcine skin, Mw = 100,000 Da, 62.4% degree of methacrylation); dextran from Leuconostoc spp. (DexMa, Mw = 450.000–650.000 Da, 15.1% degree of methacrylation); and xanthan from Xanthomonas campestris (XMa, Mw = 458,000 Da, 9.5% degree of methacrylation). The monomers (acrylamide -Aam and N,N’-methylenebis (acrylamide), bisAam)) and the photoinitiator (Irgacure 2959 (2-Hydroxy-4′-(2-hydroxyethoxy)-2-methylpropiophenone)) were purchased from Sigma-Aldrich, Darmstadt, Germany. Absolute ethyl alcohol, the dialysis membrane (Mw = 12,000–14,000 Da), isopropanol, Dulbecco’s Modified Eagle’s Medium/Nutrient Mixture F-12 Ham, Hanks’ Balanced Salt Solution, MTT (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium), and PBS (phosphate-buffered saline, pH = 7.2) were provided by Sigma-Aldrich, Darmstadt, Germany. Other essential elements used in the study are the antitumor drug doxorubicin hydrochloride (DOX, provided by Sigma-Aldrich, Darmstadt, Germany) and epidermal carcinoma cells A431 (acquired from the European Collection of Cell Cultures (ECACC), Salisbury, United Kingdom).
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8

Synthesis and Characterization of Urea Derivatives

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All chemicals were purchased from commercial suppliers. We used xanthan manufactured by Sigma-Aldrich (St. Louis, MO, USA). Sulfamic acid, 1,4-dioxane, and urea (Khimreaktivsnab, Republic of Bashkortostan, Ufa, Russia) were used in this work. Ethyl urea (Alfa Aesar, ThermoFisher GmbH, Kandel, Germany), methyl urea (J&K Scientific GmbH, Pudong District, Shanghai, China), and hydroxyethyl urea (Flourochem Ltd., Derbyshire, UK) were also used in this work.
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9

Cladode Harvest and Ingredient Procurement

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A total of 10 kg of OFIC were harvested during 2021 in the region of Haizer (latitude of 36,397; longitude of 399,917, 36°23′49″ North, 3°59′57″ East; altitude: 609 m), with an annual average temperature of 16 °C and precipitations of 650 mm/year, located at 9 km from Bouira in northern Algeria. The harvest was performed in cardboard bags.
The cladodes were selected according to size: 30–35 cm in length and 10 cm in width. Gum arabic, xanthan (food grade), agar, and glycerol (analytical grade) (Figure 1) were purchased from Sigma-Aldrich (≥99.5% purity) (St. Louis, MO, USA).
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10

Isolation and Characterization of Alginate Oligosaccharides

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Agarose, alginate (viscosity, ≥2,000 cP; 2% [25°C]), chondroitin, chondroitin sulfates (A, C, and E types), dermantant sulfate (B type), hyaluronan, heparin, heparin sulfates, and xanthan were purchased from Sigma-Aldrich Co. Ltd., USA. G blocks, M blocks, and standard size-defined M-enriched or G-enriched saturated sugar chains (i.e., disaccharide, trisaccharide, tetrasaccharide, and pentasaccharide, with >95% promised purities) were purchased from Qingdao BZ Oligo Biotech Co. Ltd. (Qingdao, China), and various size-defined unsaturated oligosaccharide fractions were prepared from partial alginate digests with the alginate lyase Aly5 (27 (link)).
Flammeovirga sp. strain MY04 (CGMCC no. 2777) was cultured at 30°C in a medium (pH 7.0) containing (wt/vol) 0.40% tryptone, 0.25% yeast extract, and 3.0% NaCl (32 (link)). Escherichia coli strains were cultured at 37°C in Luria-Bertani (LB) broth supplemented with ampicillin (100 μg/ml) or kanamycin (50 μg/ml) when necessary. Agar powder (1.5%, wt/vol) was used to prepare the solid media.
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