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Sabouraud dextrose broth (sdb)

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Sabouraud dextrose broth is a microbiological culture medium used for the growth and isolation of fungi, including yeasts. It provides the necessary nutrients, including dextrose, for the cultivation of a wide range of fungal species.

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49 protocols using sabouraud dextrose broth (sdb)

1

Candida Identification from Vaginal Samples

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Vaginal samples were inoculated in sterile tubes with 9 cc of Sabouraud Dextrose Broth (SDB) (Oxoid, England) and incubated aerobically for 24 h at 37°C. A 10 μL sample was then taken from each sterile tube and inoculated on Sabouraud Dextrose Agar (SDA) (Oxoid, England) with chloramphenicol and gentamicin. Petri dishes were incubated at 37°C in an aerobic environment for 24–72 h, and growth from at least 5 colonies was analyzed. These colonies were examined macroscopically, followed by Gram stain, for microscopic examination. Candida species and other organisms were identified in the isolates [19 ].
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2

Zoospore-mediated Pathogenicity of Pythium insidiosum

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Six strains of P. insidiosum from different sources were selected; ATCC 58643 (CBS 574.85) from an equine, CBS 101039 from an Indian patient, CBS 777.85 from an equine, PC10 from a Thai patient, ATCC 90586 from an American patient, and PEC1 from water environment in Pasak Chonlasith Dam, Thailand. These isolates were grown in Sabouraud dextrose broth (SDB, Oxoid, UK). The zoosporogenesis technique was modified from Mendoza and Prendas [22 (link)]. The pathogens were cultured on sterile grass leaves (Axonopus compressus). After incubating at 37˚C for 48 h, grass leaves with hyphae were further transferred into the induction medium to generate encysted zoospores. The induction medium contains calcium and magnesium ions that facilitate the development of zoospores by all Pythium species [5 (link)]. The encysted zoospores were harvested from the induction medium and washed with 1x phosphate-buffered saline (PBS, Biolegend, USA). Then, zoospore numbers were counted by a hemocytometer. All six strains of zoospores were individually used in all experiments; neutrophil killing assay, phagocytosis, and NET formation.
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3

Murine Model of Chronic Kidney Disease with Candida Infection

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First, 5/6 nephrectomy (5/6 Nx) surgery was performed via flank approach under isoflurane anesthesia by removing the upper and lower poles of the left kidney before the right nephrectomy 1 week later, as previously described [18 (link),42 (link)]. Only mice with a weight of the removed fragments from the left kidney to the right kidney weight in a ratio of 0.55–0.72 were included to ascertain that removal of the left kidney mass is optimum for CKD development [77 (link)]. After that, the 5/6 Nx mice were orally administered phosphate buffer solution (PBS) (5/6 Nx PBS) or Candida albicans (5/6 Nx + Candida) to explore the impact of gut fungi using C. albicans from the American Type Culture Collection (ATCC 90028) (Fisher Scientific, Waltham, MA, USA), which was cultured overnight on Sabouraud dextrose broth (SDB) (Oxoid, Hampshire, UK) at 35 °C for 48 h before enumeration using a hemocytometer. The C. albicans at 1 × 106 CFU in 0.5 mL PBS or PBS alone was orally administered on alternate days starting from 4 weeks after the right nephrectomy until 20 weeks. Another group of mice underwent the sham operation to identify renal vessels before abdominal closure (Sham group). The Candida-administered sham mice have not been demonstrated here because of the lack of difference from the sham control reported in a previous publication [5 (link)].
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4

Antifungal Agents Efficacy Testing

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The reagents used for the study include; Sabouraud dextrose agar- SDA (Oxoid, England), Sabouraud dextrose broth- SDB (Oxoid, England), Amphotericin B powder (Sigma- Aldrich), Fluconazole powder (Sigma- Aldrich), Terbinafine powder (Sigma- Aldrich), Dimethylsulphoxide (Sigma- Aldrich). All other reagents were of analytical grade.
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5

Fungal Strain Cultivation and Preparation

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The reference fungal strains used for the experiments were: Candida albicans ATCC (American Type Culture Collection) 90028, Candida parapsilosis ATCC 22019, Candida krusei ATCC 6258, Candida auris CBS (Fungal Biodiversity Centre) 10913, Candida guilliermondii 184 (the collection of the Cantacuzino National Research and Development Institute for Microbiology and Immunology, Bucharest). The strains are part of the collection from the Microbiology Department from UMPhST (George Emil Palade University of Medicine, Pharmacy, Science, and Technology of Târgu Mureş) and the Ion Ionescu de la Brad University of Life Sciences, Iași, stored at −70 °C. For each experiment, the strains were revitalized in Sabouraud Dextrose Broth (SDB, Oxoid, Basingstoke, United Kingdom) and incubated for 24–48 h, at 37 °C, in an orbital shaker.
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6

Anaerobic Culture of Oral Pathogens and Probiotics

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E. faecalis ATCC 29 212, F. nucleatum ATCC 25 586, and P. gingivalis ATCC 33 277 were cultured using brain heart infusion (BHI) (Oxoid, Hampshire) media. C. albicans ATCC 10 231 was cultured using Sabouraud Dextrose Broth (SDB) (Oxoid, Hampshire). All cultures were incubated anaerobically at 37 °C for 48 h. Lactobacillus reuteri LC 382 415 and Lactobacillus reuteri Prodentis (Biogaia, Stockholm, Sweden) were cultured using De Man, Rogosa, and Sharpe (MRS) (Oxoid, Hampshire) broth in an anaerobic atmosphere (97 % humidity with 10 % CO2, 85 % N2, and 5 % H2) at 37 °C for 3 days.
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7

Antifungal Activity of Cassia spectabilis

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An 18-hour culture of C. albicans was diluted with a sterile physiologic saline solution [PS; 0.85% (w/v) sodium chloride] with reference to the 0.5 McFarland standard to achieve inoculums of approximately 108 colony forming units (CFU)/mL. A serial dilution was carried out to give final concentrations between 1.563 mg/mL and 200.00 mg/mL of crude extract of C. spectabilis. The tubes were inoculated with 500 μL yeast suspension per mL Sabouraud dextrose broth (SDB) (Oxoid, Basingstoke, UK), homogenized, and incubated at 37 °C. After incubation, 20 μL was withdrawn from each tube, inoculated on SDA agar plates, and incubated at 37 °C for 24 hours. The minimal inhibitory concentration (MIC) value was determined as the lowest concentration of the crude extract in the broth medium that inhibited a visible growth of the test microorganism.10 (link)
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8

Essential Oil Antimicrobial Effectiveness

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The essential oil’s antimicrobial effectiveness was assessed against various strains of bacteria and yeast. Gram-positive bacteria included Micrococcus luteus CCM 732, Listeria monocytogenes CCM 4699, and Staphylococcus aureus subsp. aureus CCM 3953, while Gram-negative bacteria included Escherichia coli CCM 3953, Salmonella enterica subsp. enterica CCM 3807, and Yersinia enterocolitica CCM 7204T. Yeast strains included Candida albicans CCM 8186, C. glabrata CCM 8270, C. krusei CCM 8271, and C. tropicalis CCM 8223. All microbial strains were obtained from the Czech Collection of Microorganisms in Brno, Czech Republic. Prior to analysis, bacterial and yeast cultures were incubated for 24 h at 37 °C and 25 °C in Mueller–Hinton Broth (MHB, Oxoid, Basingstoke, UK) and Sabouraud Dextrose Broth (SDB, Oxoid, Basingstoke, UK), respectively. The bacterial and yeast inoculum’s optical density was standardized to 0.5 McFarland standard on the day of the experiment [22 (link)].
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9

Antimicrobial Potential of Essential Oils

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Twelve commercial essential oils (Essential Oils Direct Ltd., Oldham, UK) (Table 5), two terpenes (E-cinnamaldehyde and linalool (Sigma-Aldrich, Gillingham, UK)), chlorhexidine digluconate (CHX) (Sigma-Aldrich, Gillingham, UK) and triclosan (Irgasan from Sigma-Aldrich, Gillingham, UK) were evaluated.
The commercial essential oils were tested at a range of concentrations against planktonic growth (2% (v/v) to 0.007% (v/v) and biofilms (8% (v/v) to 0.125% (v/v)). All agents were prepared in Sabouraud Dextrose Broth (SDB; Oxoid Ltd, Basingstoke, UK). To enhance dispersion of essential oils in the medium, 1% (v/v) Tween 80 (Sigma-Aldrich, Gillingham, UK) was added. In the case of biofilm studies, 0.015% (w/v) Agar Bacteriological (LP0011 Oxoid) was added to SDB [53 (link)]. CHX was used in SDB at concentrations between 0.04% (v/v) to 3.1 × 10−4% (v/v) and from 0.08% (v/v) to 6.2 × 10−4% (v/v) for planktonic and biofilm growth experiments, respectively. A 20% (w/v) stock solution of triclosan was prepared in Dimethyl Sulfoxide (DMSO) (Fisher Chemical, Loughborough, UK). Serial doubling dilutions of the stock solution were prepared in SDB yielding final concentrations from 5.2 × 10−6% (v/v) to 6.7 × 10−4% (v/v) and from 1.7 × 10−4% (v/v) to 5 × 10−3 (v/v) for planktonic and biofilm experiments, respectively.
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10

Microtiter Plate Biofilm Screening

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The microtiter plate method was used to screen biofilm formation [34 (link),35 (link)]. Sabouraud dextrose broth (SDB) (Oxoid, Basingstoke, UK) was used with a final concentration of 8% w/v glucose (Sigma-Aldrich, St. Louis, MO, USA). The candida inoculum was adjusted to approximately 3 × 107 CFU/mL. Biofilm production was performed in flat-bottom microtiter plates (Hyundai Micro Co., Seoul, LTD., Korea). Sabouraud dextrose broth (180 μL) was inoculated with 20 µL cell suspension and incubated at 37 °C for 24 h. The plates were rinsed once with distilled water after incubation, and the microtiter plate was stained for 45 min with crystal violet solution. Each well was thoroughly rinsed with sterile distilled water and then destained with ethanol (95%) (Sigma-Aldrich, St. Louis, MO, USA). The destaining solution was quantified using an ELISA plate reader (Euroclone BIOTEK, Pero, Italy) at 595 nm [34 (link),35 (link)]. Positive control for biofilm development was C. albicans ATCC 10231. The isolates were classified as non-biofilm producers, weak, moderate, and strong biofilm producers according to their OD590 nm values. IF OD590 nm ≤ ODc the isolate is considered (None-biofilm producers), weak biofilm producers, when OD ˂ OD590 nm ≤ 2 × ODc, moderate biofilm producers, when 2 × ODc ˂ OD590 nm ≤ 4 × ODc, and strong biofilm producers when OD590 nm ˃ 4 × ODc [34 (link),35 (link)].
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