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6 protocols using anti runx3

1

Western Blot Analysis of Transcription Factors

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Cells were lysed in RIPA buffer supplemented with protease inhibitors (Halt™, Thermo Scientific) and phosphatase inhibitors (Thermo Scientific) and incubated at 4°C for 20 minutes and were then cleared by spinning maximum speed for 10 minutes. The protein concentration of lysates was determined using the Pierce BCA Protein Assay (Thermo Scientific). Total protein concentrations of 40 μg were run on NuPage 4-12% Bis-Tris gradient gels (Thermo Scientific) by SDS-PAGE and transferred to nitrocellulose membranes. All western blots were imaged with a BioRad ChemiDoc MP imager. The following antibodies were used for immunoblotting: anti-Hsp90 (1:10000); BD Biosciences 610418, anti-Runx1 (1:1000), Cell Signaling Technology, 8529S, anti-Runx2 (1:1000), Cell Signaling Technology, 12556S, and anti-Runx3 (1:1000) Abcam, ab23981.
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2

Immunostaining of Nerve Regeneration Markers

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At 1, 4, 7, and 14 days post-surgery, nerve samples from proximal nerve stump and normal nerve sections (0 day) were obtained for cutting into longitudinal sections that were subjected to immunoffuorescent triple-staining with rabbit anti-ALCAM polyclonal antibody (1:100 dilution, Abcam), anti-CREB1 (1:800 dilution, CST), anti-NRP1 (1:200 dilution, Abcam), anti-NRP2 (1:100 dilution, CST), anti-RAC1 (1:100 dilution, Sigma), anti-RUNX3 (1:600 dilution, Abcam), mouse anti-NF200 (1:400 dilution, Sigma) and Hoechst 33342 (1:5,000 dilution, Life Technologies) respectively. Primary antibodies incubated with the nerve sections at 4°C overnight, followed by further reaction with the secondary antibody (Goat anti-Mouse IgG-Alex-488, 1:500 and Donkey anti-Rabbit IgG-Cy3, 1: 1,000) at 4°C overnight, and nerve sections were observed by the aid of a confocal laser scanning microscope (TCS SP2, Leica).
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3

Apoptosis Pathway Evaluation in PDT-Treated Cells

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Cells were treated with PDT, incubated for 4 h, then lysed (1.5×105 cells) in cell lysis buffer (Cell Signaling Technology, MA, USA). Next, proteins were separated using 10% SDS-PAGE and transferred to a methanol-activated polyvinylidene fluoride membrane (Bio-Rad, CA, USA). The membrane was blocked for 1 h in PBST containing 5% milk and subsequently probed with anti-cleaved caspase-3 antibody, anti-cleaved caspase-9 antibody (Cell Signaling Technology, MA, USA), anti-RUNX3 (1:1,000) was obtained from Abcam (Abcam, Cambridge, UK). Additionally, antibodies against Bax (1:1,000), Bim (1:1,000) and Bcl-2 (1:1,000) were obtained from BioVision (BioVision, CA, USA). An anti-actin antibody (1:2,000) was used as a loading control (Sigma, MO, USA). Blots were then incubated for 1 h with horseradish peroxidase-conjugated anti-mouse (1:2,000) or rabbit (1:2,000) secondary antibodies (Cell Signaling Technology, MA, USA), and detection was done by chemiluminescence (Santa Cruz Biotechnology, CA, USA). The density was detected using chemiluminescence (Santa Cruz Biotechnology, CA, USA).
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4

Immunohistochemical and Immunoblotting Analysis of Tumor Markers

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Formaldehyde- or paraformaldehyde-fixed tumor tissues were embedded in paraffin, and sections were stained with H&E using standard techniques. The following primary antibodies were used: anti-FLAG M2 (Sigma-Aldrich), anti-Sox9 (Sigma-Aldrich), anti-Hey1 (Abcam), anti-Runx2 (MBL), anti-CK18 (Proteintech), anti-Galectin 3 (Proteintech), anti-Ki-67 (Abcam), and anti-NCOA2/SRC2 (Cell Signaling).
Immunoblotting was performed using whole-cell lysates. The following primary antibodies were used: anti-FLAG M2 (Sigma-Aldrich), anti-Runx2 (MBL), anti-Runx3 (Abcam), anti–α-tubulin (Sigma-Aldrich), and anti-Cas9 (Novus, Centennial, CO).
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5

Western Blot Analysis of RUNX3, P21, BIM

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Western blot analysis was performed according to a previously described standard method [18 (link)] using anti-RUNX3 (1:500; Abcam, Cambridge, MA), anti-P21 (1:500; Cell Signaling, Danvers, MA), anti-BIM (1:500; Cell Signaling) or anti-GAPDH antibodies (1:3000; Cell Signaling).
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6

Western Blot Analysis of Cell Signaling Pathways

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Total protein was isolated from cell lysates with radio-immunoprecipitation assay buffer and quantified with a bicinchoninic acid protein assay kit (Beyotime Institute of Biotechnology). The proteins were resolved on 10% SDS and subsequently transferred to polyvinylidene difluoride membranes (Bio-Rad Laboratories, Inc.). Following blocking, the membranes were incubated with primary antibodies at 4°C overnight and subsequently incubated with an anti-rabbit secondary antibody (Abcam; 1:5,000) at room temperature for 1 h. The membranes were scanned on an Odyssey Imaging System and analyzed with Odyssey v2.0 software (LICOR Biosciences). The primary antibodies used in the present study were as follows: anti-CDKN1B (Abcam; 1:1,000), anti-SATB2 (Abcam; 1:1,000), anti-ATF4 (Abcam; 1:1,000), anti-Runx3 (Abcam; 1:1,000), anti-Cyclin E1 (Abcam; 1:1,000), anti-CDK2 (Abcam; 1:1,000), anti-Bax (Abcam; 1:1,000), anti-X-linked inhibitor of apoptosis protein (XIAP, Abcam; 1:1,000), anti-pro-caspase 3 (Abcam; 1:1,000), anti-active caspase 3 (Abcam; 1:1,000) and anti-β-actin (Abcam; 1:1,000). β-actin was used as an internal control.
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