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5 protocols using sc 271786

1

Protein Expression Analysis in Cancer Cells

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Cells treated with DMSO, Niebla sp. (1), or tumidulin for 48 h were washed twice with ice-cold phosphate-buffered saline (PBS) and lysed in lysis buffer [24 (link)]. Antibodies against ALDH1, CD44, CD133, Lgr5, Msi1, and α-tubulin were used as previously described [17 (link)]. Antibodies against Gli1 (sc-20687; SANTA CRUZ, Dallas, TX, USA), Gli2 (sc-271786; SANTA CRUZ), Smoothened (SMO; ab72130; Abcam, Cambridge, MA, USA), and β-Actin (sc-47778; SANTA CRUZ) were detected with horseradish peroxidase-conjugated secondary antibody (Thermo Fisher Scientific, Waltham, MA, USA) using an Immobilon Western Chemiluminescent HRP Substrate Kit (Merck Millipore, Billerica, MA, USA) and luminescence imaging on an Image Quant LAS 4000 mini. Bands were measured using Multi-Gauge 3.0 software, and the relative density was calculated based on the density of the β-actin bands in each sample. Values are expressed as arbitrary densitometric units corresponding to signal intensity.
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2

Comprehensive Western Blot Analysis

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Western blot was performed as previously described 20 (link). Primary antibody used in our studies included Ac-α-Tub, collagen type I (COL I), KIF3A (ab125356, ab34710, ab11259, Abcam), intraflagellar transport protein (IFT) 88 (MFG42775, Aviva Systems Biology), ARL13B (GTX122703, GeneTex), α-SMA, (1184-1, Eptomics), MRTF-A, SHH, SMO, GLI1 (A12598, A7726, A3274, and A8387, ABclonal, Wuhan, China), SRF, PTC1, α-Tub (AF6160, AF5202, AF7010, Affinity Biosciences, Cincinnati, OH, USA), Ac-α-Tub, LaminB, GLI2, GLI3, and GAPDH (sc-23950, sc-56143, sc-271786, sc-74478, and sc-25778, Santa Cruz Biotechnology, Santa Cruz, CA, USA).The results were normalised with loading control and expressed as the fold of the specific bands to the control group. Western blotting was repeated at least three times.
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3

Determining Protein Expression Levels

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CSC221, cells treated for 48 h were washed twice with ice-cold phosphate-buffered saline (PBS) and lysed in lysis buffer24 (link). Antibodies against ALDH1 (sc-166362; Santa Cruz Biotechnology, Dallas, TX, USA), CD133 (CA1217; Cell Applications, San Diego, CA, USA), CD44 (3570; Cell Signaling Technology, Danvers, MA, USA), Lgr-5 (ab75850; Abcam, Cambridge, MA, USA), Msi-1 (ab52865, Abcam), Gli1 (sc-20687; SANTA CRUZ, Dallas, TX, USA), Gli2 (sc-271786; SANTA CRUZ), Smoothened (SMO; ab72130; Abcam, Cambridge, MA, USA), Bmi-1 (ab38295; Abcam) were used to detection. α-tubulin (2125, Cell Signaling Technology) and β-Actin (sc-47778; SANTA CRUZ) antibody was used as an internal control. The bands were cut according to the protein size region of interest before intubating with antibodies and then imaged with an Immobilon Western Chemiluminescent HRP Substrate Kit (Merck Millipore, Billerica, MA, USA). Uncropped images of the blot images are presented as additional data (Supple Figs. 10, 11). Bands relative density was calculated based on the density of α-tubulin and actin bands in each sample. Values were demonstrated as arbitrary densitometric units corresponding to signal intensity.
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4

Analyzing Protein Phosphorylation and Expression

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Protein isolation and western blots were performed as described before [48 (link)]. For analysis of phosphorylated proteins, cells were harvested and lysed with radioimmunoprecipitation assay (RIPA) buffer (89900, Thermo Fisher Scientific, Waltham, MA, USA) supplemented with protease and phosphatase inhibitors (cOmpleteTM Tablets, 11697498001, Roche, Basel, Swiss; Sodium orthovanadate, 13721-39-6, Fivephoton Biochemicals, San Diego, CA, USA). Antibodies against rabbit anti-GLI1 monoclonal antibody (C68H3, 1:1000, Cell Signaling Technology, Inc., Danvers, MA, USA), mouse anti-GLI-2 (Dilution, C-10: sc-271786, Santa Cruz Biotechnology, Dallas, TX, USA), rabbit Anti-HSF1-phospho(S326) antibody (1:5000, EP1713Y, abcam, Cambridge, UK), rabbit Anti-HSF1 antibody (1:1000, 4356, Cell Signaling Technology, Inc., Danvers, MA, USA), Mouse anti-HSP70/HSPA1A antibody (1:1000, MAB1663, R&D Systems, Inc. Minneapolis, MN, USA), Rabbit anti-HSP90 Antibody (1:1000, #4874, Cell Signaling Technology, Inc., Danvers, MA, USA) or mouse anti-β-ACTIN (sc-47778, 1:5000, Santa Cruz Biotechnology, Dallas, TX, USA). Secondary antibodies against HRP-linked anti-rabbit immunoglobulins (1:10,000, 7074) and anti-mouse IgG (1:10,000, NXA931) secondary antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA) and GE Healthcare (Cytiva, Marlborough, MA, USA), respectively.
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5

Western Blot Analysis of Hedgehog Signaling Proteins

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Whole-cell protein extraction, determining the protein concentration, and western blot technique were performed as previously described [20 (link)]. The membranes were probed with following primary antibodies: rabbit anti-GLI1 1:300 (V812, Cell Signaling Technology, Danvers, MA, USA), mouse anti-GLI2 1:100 (sc-271786, Santa Cruz Biotechnology, Dallas, TX, USA), rabbit anti-GLI3 1:1000 (GTX104362, GeneTex, Irvine, CA, USA), rabbit anti-PTCH1 1:1000 (17520-1-AP, ProteinTech, Rosemont, IL, USA) and mouse anti-β-actin 1:4000 (60008-1-Ig, ProteinTech, Rosemont, IL, USA) was used as loading control. After overnight incubation, membranes were washed in TBST (Tris-Buffered Saline, 0.1% Tween® 20 Detergent) and incubated for 1 h with appropriate secondary HRP-conjugated antibodies, anti-rabbit 1:6000 (554021, BD Pharmingen, San Jose, CA, USA) and anti-mouse 1:8000 (554002, BD Pharmingen, San Jose, CA, USA). Proteins were visualized using SuperWest Signal Pico and Femto reagents (Thermo Fisher Scientific, Waltham, MA, USA) on Uvitec Image Alliance 4.7 instrument (UVItec, Cambridge, England, UK).
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