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Digimizer image analysis software

Manufactured by MedCalc
Sourced in Belgium

Digimizer is an image analysis software designed for quantitative analysis of digital images. It provides tools for measuring distances, areas, angles, and various other parameters within an image. The software is capable of handling a wide range of image file formats and can be used for a variety of applications that require image processing and analysis.

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16 protocols using digimizer image analysis software

1

Radiographic Measurement Using Epson L210

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All the radiographs [Figure 2a-d] were scanned using Epson L210 (Digital ICE Technologies) and measurements were carried out in Digimizer image analysis software, MedCalc Software Ltd, Ostend, Belgium.[11 (link)]
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2

Characterizing Electrospun Scaffold Hydrophilicity

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Before and after exposure to glutaraldehyde, water
contact angles of electrospun scaffold were measured
by a video-based optical system (model MV500 digital
microscope, EasyTear, Italy). The images of water drops
on the PVA/HSA/gelatin scaffold surface from three
different angles were captured by the camera and analyzed
by Digimizer image analysis software (MedCalc Software
bvba, Belgium) to assess hydrophilicity. The volume of
each water droplet was 5 µL, and measurements were
done 10 seconds after contact.
To evaluate the attachment of hTCs onto fibers, we
performed hematoxylin (Merck, Germany) and eosin
(Merck, Germany) (Hslides on days 7 and 14.
The morphology of the scaffold was also characterized
by scanning electron microscopy (SEM, model Phenom
ProX, Phenom-World, The Netherlands) with an
accelerating voltage of 15 kV after coating with gold. The
average diameter of fibers and pore sizes were randomly
determined by image analysis software (ImageJ, National
Institute of Health, USA) to analyze 100 different fibers
in each SEM image.
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3

Pork Loin Microstructure Analysis

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Microstructure observation was performed as described by Anese et al. (2012) (link) with some modifications. A 4-μm-thick section of formalin-fixed and paraffin-embedded sample was prepared using a microtome (Leica RM2255, Leica, Germany). Sections were stained with Harris hematoxylin and eosin Y alcoholic solution (BBC Biochemical, USA) using an autostainer (Tissue-Tek Prisma E2, Sakura Finetek USA, USA) prior to observation under a light microscope (Pannoramic MIDI, 3DHISTECH, Hungary). The intracellular spaces (irregular areas with white color) of the pork loin microstructure were analyzed using Digimizer image analysis software (version 4.6.1, MedCalc Software, Belgium).
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4

Gastric Lesion Evaluation Protocol

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Macroscopic lesions were examined by a pathologist blinded to treatment allocation, and the surface of the glandular stomach, the sum of the area of the lesions, the percent of the lesion area, and the total number of lesions per glandular stomach were recorded and analyzed using Digimizer image analysis software (version 4.1; MedCalc Software) (Szabo et al., 1985). The lesions were classified into four groups as follows: 0 = normal mucosa; 1 = one to four small petechiae; 2 = five or more petechial spots or hemorrhagic streaks up to 4 mm; and 3 = erosions longer than 5 mm or confluent hemorrhages.
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5

Histological Analysis of Rat Tibias

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The tibias collected from the rats were dehydrated by alcohol, and then were prepared for embedding in a light cure acrylic resin (NMS-SL, Nanjing Mucyte BioTech Co,.Ltd, Nanjing, China). The central sagittal histological sections were obtained using a LEICA RM2145 (Leica Biosystems Nussloch GmbH, Nussloch, Germany). The fluorescence of tetracycline and calcein was observed under a fluorescence microscope (Eclipse 90i, Nikon, Tokyo, Japan), and the percent labeled perimeter (%L.Pm, %) were measured with the Digimizer Image Analysis Software (Version 4.2.6.0, MedCalc Software bvba), and mineral apposition rate (MAR, μm/d) and bone formation rate (BFR, μm/d*%) were calculated accordingly.
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6

Wound Scratch Assay for Cell Migration

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For the wound scratch assay, cells were grown in 6-well plates until they reached confluence. After 24 h incubation in serum-reduced medium, cell-free zones were created by scratching the cell layer with a P200 pipette tip. Images of the cell-free zone were captured immediately (0 h), 4 and 8 h after wounding, using a Leica DMi1 phase-contrast microscope (Leica Microsystems, Wetzlar, Germany). Between imaging periods, the cells were incubated at 37°C and 5% CO2. The area of the cell-free zone was measured using Digimizer image analysis software (MedCalc Software bvba, Ostend, Belgium). The closure of the cell-free area was calculated as follows: (area of cell-free zone at t0h - area of cell-free zone at txh)/area of cell-free zone at t0h.
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7

Flap Viability Assessment Protocol

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One week after the flap surgery, digital photographs of the flaps were taken from
a distance of 50cm. The flap areas and the viable parts were calculated in mm2
by Digimizer image analysis software (Med-Calc Software, Ostend, Belgium) (
Fig. 1 ). The viable part of the flap
was found by subtracting the necrotic part of the flap from the whole flap
area.
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8

Quantifying Muscle Changes in Hip Pathologies

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Hip MRI was performed with a 3.0-T MR scanner (Magnetom Trio with TIM System;
Siemens Healthcare) and a dedicated flexible surface coil around the affected
hip joint, as described by Gao et al.7 (link)
The preoperative alpha angle and lateral center-edge angle (LCEA) were
measured on the 45° Dunn view and supine anteroposterior hip radiographs,
respectively, as described in previous studies.1 (link),3 (link)
The first author (G.G.), who had >5 years of experience in hip MRI and
arthroscopy, analyzed all images and was blinded to the clinical and operative
findings. Based on the LCEA measurement, the patients were divided into 3
groups: BDDH group (20°-25°), control group (25°-40°), and pincer group
(>40°) (Figure
1
).
The cross-sectional areas of the IC and the RF were measured preoperatively and
postoperatively on a single MRI axial slice at the level of the femoral head
center as described by Haefeli et al10 (link)
(Figure 2). The
measurements were performed by 2 evaluators (G.G. and Y.X.). The outlines of
both the IC and RF were determined manually, and the cross-sectional area of
each was calculated using Digimizer Image Analysis software (Version 4.5.2;
MedCalc Software Ltd). The IC-to-RF ratio was calculated by dividing the IC
cross-sectional area by the RF cross-sectional area. We randomly selected 30
scans to evaluate interrater reliability.
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9

Thyroid Follicle Morphometry Analysis

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Thyroid follicle area measurements were performed on digital images of hematoxylin and eosin–stained thyroid tissue sections using the Digimizer Image Analysis software (MedCalc Software Ltd, Ostend, Belgium). A closed loop was drawn around individual thyroid follicles, and the area was calculated by the software using the length and width measurements (Fig. S5 (26 )). For each thyroid gland, measurements from 100 follicles were collected. Five animals were analyzed per group.
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10

Phospho-MAPK Array Profiling of IL-6 Response

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LCLs were seeded at a density of 2.5 × 106 cells in 6-wells plates containing RPMI-1640 supplemented with 0.5% FBS and incubated for 24 hours at 37 °C, in order to synchronize cell growth. Subsequently, 9.5% FBS was added to each well and cells were incubated in the presence or in the absence of 10 ng/ml of human recombinant IL-6 (R&D systems, Minneapolis, MN) for 15 min. Cells were then lysed and total proteins were extracted in the presence of Complete EDTA-free Protease Inhibitor Cocktail Tablets (Roche, Penzberg, Germany). According to the manufacturer’s protocol, 200 μg cell lysate was incubated with each human phospho-MAPK array (R&D Systems, Minneapolis, MN). Cell lysates were diluted and incubated overnight with nitrocellulose membranes in which capture and control antibodies against 43 different kinases and transcription factors, have been spotted in duplicate. The arrays were washed to remove unbound proteins and were incubated with a cocktail of biotinylated detection antibodies. Streptavidin-HRP and chemiluminescent detection reagents were applied and a signal was produced at each capture spot corresponding to the amount of phosphorylated protein bound. Pixel densities on developed X-ray film were collected and analyzed using a transmission mode scanner and Digimizer image analysis software (MedCalc software, Ostend, Belgium).
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