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6 protocols using dimethyl sulfoxide (dmso)

1

Chitosan-Gelatin Hybrid Scaffold for Vascular Tissue Engineering

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Bombyx mori silkworm cocoons were purchased from a local market. Chitosan (Medium molecular weight,), gelatin (type A, from porcine skin), dialysis cassette, and thiazolyl blue tetrazolium bromide (MTT color) were purchased from Sigma-Aldrich. Thermoplastic polyurethane (TPU, Mw = 85,000)) was purchased from Bayer, Germany. Heparin Sodium (5000 IU/ml with 200 unit/mg) was purchased from Caspian Tamin Pharmaceutical Company, Iran. Ethanol, polyethylene oxide (PEO, Mw = 900,000), lithium bromide (LiBr), sodium carbonate, tetrahydrofuran (THF), dimethylformamide (DMF), 1-ethyl-3-(3-dimethylaminopropyl) carbodiimide hydrochloride (EDC), N-Hydroxysuccinimide (NHS), toluidine blue, acetic acid, hydrochloric acid, sodium hydroxide and hexane were purchased from Merck. Rat smooth muscle cell (a7r5) and human umbilical vein endothelial cell line (HUVEC) were obtained from Pasteur Institute, Tehran, Iran. Fetal bovine serum (FBS), DMEM, DMEM/F12 (1/1), 1% penicillin/streptomycin, Trypsin/EDTA, and DMSO were purchased from BioIdea, Iran.
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2

Cytotoxicity Evaluation of Cell Scaffolds

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Cytotoxicity of the scaffolds were measured by the 3-(4,5-Dimethylthiazol-2-yl)-2,5- Diphenyl Tetrazolium Bromide assay kit (MTT, Bioidea, Iran). The hASCs were seeded on sterilized scaffolds (20,000 cells/cm2). Then they were cultured in DMEM (15% FBS) at 5% CO2 and 37°C in the incubator for 1, 4 and 7 days. After that, 30 μl MTT was poured into each well, and incubation proceeded for 3 h. Then 200 μl DMSO (Bioidea, Iran) was added to cells and keep them for 30 min in a dark place. Finally, the absorption amounts were examined by using an ELISA plate reader (Stat Fax-2100, United States) at a wavelength of 545 nm.
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3

Evaluating HDF Viability Using MTT Assay

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The viability of HDFs was evaluated using MTT assay. HDFs were seeded in 96-well plates at 5 × 104 cells/well in 200 μL of complete media and incubated for 24 hours in the incubator to allow cell adhesion. The cells were exposed to ultrasound beam according to the procedures mentioned above and then returned to the humidified incubator for other 24 hours. Then, supernatant medium was discarded and 100 μL fresh serum-free medium was added. Then, we added a 50 μL MTT solution (0.5 mg/mL) (Bio idea, Tehran, Iran) to each well and incubated plates for an additional 4 hours in dark conditions. After that, we removed the medium and added 200 μL DMSO (Bio idea, Tehran, Iran) to each well in order to dissolve the purple formazan precipitate. Absorbance was measured using an ELISA microplate reader (Anthos 2020, Biochrom Ltd, and UK) at a wavelength of 570 nm. We calculated the percentage of viability according to the following formula: Viability (%) = (average OD (optical density) in the treated sample/ average OD in the control sample) × 100.
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4

Evaluating Cell Viability with MTT Assay

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The cells’ relative viability was assessed using 3-(4,5-dimethyl thiazolyl-2)-2,5-diphenyl tetrazolium bromide (MTT) obtained from Sigma-Aldrich. At 1, 3, and 7-day intervals, the culture medium was extracted. Both the cell-cultured samples and the control group (with 3 samples in each group) were treated with MTT solution, which consisted of 0.5 g/mL MTT reagent in PBS. After a 4-h incubation period at 37 °C, the dark blue formazan crystals were dissolved in MTT solvent by dimethyl sulfoxide (DMSO) (Bioidea, Iran) and allowed to sit at 37 °C for 30 min. Following this, 100 μL of the dissolved formazan solution from each sample was transferred to a 24-well plate. A microplate reader (Bio Rad, Model 680 Instruments) was used to measure the optical density (OD) of each well at 490 nm wavelength. The relative cell viability was determined using Equation (3) [26 (link)]: Relative cell viability%=AsampleAbAcAb
ASample, Ab, and Ac represent the absorbance values of the sample, blank (DMSO), and control (TCP), respectively.
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5

Insulin Aptamer Synthesis and Characterization

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BIO-RP-purified DNA oligonucleotides (such as biotin-5′ GGTGGTGGGGGGGGTTGGTAGGGTGTCTTC3′, as a biotin-labelled G-quadruplex insulin aptamer [27 (link)], and DNT staples) were synthesized by Bioneer, Korea. In addition, to rule out non-specific insulin binding, a control 30 mer DNA oligonucleotide was synthesized by Bioneer with a random sequence (biotin-5' NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN3′). M13mp18phage genome and T4 DNA ligase were purchased from New England Biolabs (Massachusetts, USA). Quantum Prep Freeze ‘N Squeeze DNA gel-extraction spin columns were obtained from Bio-Rad. Streptavidin (fluidMAG-Streptavidin) magnetic nanoparticles of 100 nm diameter size and a Magneto PURE-Micro separator were purchased from Chemicell (Germany). 3, 3′, 5, 5′ tetramethylbenzidine (TMB), hemin (Bioextra, from porcine), insulin and stop reagent for the TMB substrate were provided from Sigma, USA. Hemin stock solution (5 mM) was prepared in dimethyl sulfoxide (DMSO) (purchased from Bio Idea Company, Tehran, Iran), stored in the dark at – 20°C and diluted to the required concentration with buffer solution (20 mM Tris-HCl, 40 mM KCl, 200 mM NaCl, 0.06%(v/v) Triton X-100, pH 7.4). The desired concentration of insulin was dissolved in binding buffer (20 mM Tris-HCl, 140 mM NaCl, 5 mM KCl, 1 mM CaCl2 and 1 mM MgCl2, pH 7.4). The insulin ELISA kit was purchased from Demeditec, Germany.
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6

Cell Viability and Apoptosis Assay Protocol

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In this experimental study, Phosphate-buffered saline (PBS), Roswell Park Memorial Institute (RPMI) 1640, and Penicillin-Streptomycin (Pen-Strep) were obtained from Inoclon (Iran).
A total of 3-(4, 5 Dimethyl-2-thiazolyl)-2,5-diphenyl-2H-tetrazolium bromide (MTT) was purchased from Sigma Aldrich (Munich, Germany); Fetal bovine serum (FBS) was procured from GIBCO (USA).
The apoptosis-necrosis kit (PI, Anti-Annexin V-FITC) and Lymphodex were obtained from IQ products (Netherlands) and Serana (Iran), respectively. Dimethyl sulfoxide (DMSO)
and Heparin were procured from BioIDEA (Iran) and Caspian (Iran), respectively. Other solvents and chemical reagents were procured from Merck (Germany).
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