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3 protocols using ab216324

1

Immunofluorescence Analysis of L1 Orf1p

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MEFs transduced with lentiviruses and selected with antibiotics as described above were seeded at the concentration of 4 × 104 cells/well in the 4-well cell culture chamber slides (Nunc Lab-Tek Chamber Slide, C6932), and the cells were cultured for 48 hours under the presence of 3TC (10 μg/ml) or DMSO. Then the cells were washed with ice-cold PBS, fixed on ice with 4% paraformaldehyde (PFA) for 10 minutes, and then incubated in 100% methanol at −20 °C overnight. The cells were then treated with 200 mg/ml RNase A (Thermo Fisher) at 37°C for 4 hrs. Cells were blocked with 3% BSA and incubated overnight at 4°C with primary antibodies diluted in 3% BSA. The antibodies used and dilutions were as follows: Rabbit anti-mouse L1 Orf1p (Abcam, ab216324, 1:100), Mouse anti-single strand DNA (Sigma-Millipore, MAB3299, 1:100). After incubation, cells were washed three times with PBS for 5 minutes, and incubated with secondary antibodies (Goat anti-Rabbit IgG Alexa Fluor 488, Thermo Fisher, A11008, 1:1000; Goat anti-Mouse IgG Alexa Fluor 647, A21235, 1:1000) for 1 hour at room temperature, washed three times with PBS, counterstained with DAPI (Sigma-Millipore, MBD0015), washed, and coverslips were mounted on slides with ProLong Gold (Invitrogen). The cells were observed, and images were acquired with Leica SP8 on HC PL APO 40x/1.30 oil-immersion.
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2

Immunofluorescence of LINE-1 ORFp

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Immunofluorescence analyses were performed as described (29 (link)). Anti-LINE-1 ORFp (Abcam ab216324) was used at 1:100 dilution in PBS.
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3

Comprehensive Protein Detection Protocol

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Protein extracts were prepared with RIPA Lysis buffer (Millipore) containing 50 mM Tris–HCl, pH 7.4, 1% Nonidet P-40, 0.25% sodium deoxycholate, 500 mM NaCl, 1 mM EDTA, and 1 × protease inhibitor cocktail (Roche Applied Science). To detect LGALS3BP secreted protein, cell supernatant with trichloroacetic acid precipitation was prepared according to protocol [113 (link)]. The protein extracts were resolved by SDS-PAGE, transferred to a PVDF membrane, and incubated with the indicated antibodies. Detections were performed using ECL reagents. The antibodies used are as follows: custom-designed mouse monoclonal antibody against BORIS, mouse monoclonal antibody against CTCF (Santa Cruz, sc-271514), mouse monoclonal antibody against Tubulin (Abcam, ab7291), rabbit polyclonal antibody against SRCAP (Kerafast, ESL103), Rabbit IgG (Abcam, ab37415), rabbit monoclonal against histone H3 (Abcam, ab201456), rabbit monoclonal against LINE-1 ORF1p (Abcam, ab216324), rabbit monoclonal against IRF7 (Thermo Fisher Scientific, SC0617), rabbit polyclonal against LGALS3BP (Thermo Fisher Scientific, PA5-79597), rabbit polyclonal against IFIT1 (Abcam, ab236256), rabbit polyclonal against IFI44 (Thermo Fisher Scientific, PA5-96967), rabbit polyclonal against Aim2 (Cell Signaling, #63660), rabbit polyclonal against OAS1 (MyBioSource, MBS129033).
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