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3 protocols using anti sqstm1

1

Multifaceted Western Blot Analysis

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A combination of rabbit polyclonal anti-MAP1LC3B (Novus, NB100-2220) at 1:5000 and mouse monoclonal anti-β-Tubulin (DSHB, E7) at 1:2000 dilution was used for Western blotting of chloroquine treated cell lysates.
A combination of rabbit polyclonal anti-HDAC2 (Thermo Scientific, PA1-861) at 1:3000 and mouse monoclonal anti-β-Tubulin (DSHB, E7) at 1:2000 was used as positive controls for the nuclear and cytoplasmic fractions, respectively. A combination of mouse monoclonal anti-GFP (Clontech, 632381) at 1:2000 and rabbit polyclonal anti-MAP1LC3B (Novus, NB100-2220) at 1:5000 was used to analyze the IP fractions. For validation of the MudPIT results, Western blots were probed with either mouse monoclonal anti-SQSTM1 (BD, 610832) at 1:2000 dilution or goat polyclonal anti-MAP1B (Santa Cruz, sc-8970) at 1:100 dilution in combination with rabbit polyclonal anti-MAP1LC3B (Novus, NB100-2220) at 1:5000.
Secondary antibodies used for Western blotting included goat anti-rabbit IRDye-800CW (LI-COR, 926-32211), goat anti mouse IRDye 680 LT (LI-COR, 926-68020), donkey anti-goat IRDye-800CW (926-32214), donkey anti-rabbit IRDye 680 LT (926-68023).
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2

Western Blot and Immunofluorescence Antibodies

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The following antibodies were used for WB and/or IF as indicated: SIL1 (Proteintech #24110-1-AP); ATF4 (Cell Signaling #11815); ATF6B (Proteintech #15794-1-AP); EIF2α (Santa Cruz #sc-11386); pho-EIF2α (Cell Signaling #3597s); PDI (Assay Design #SPA-891); BiP (BD #610979); ORP150 (Abcam #EP5891); LC3B (Cell Signaling #2775); NCL (Cell Signaling #87792S); NPM (Cell Signaling #3542S); CTHRC1 (Abcam #ab85739); Anti SQSTM1 (BD Bioscience #610833); LAMP1 (Abcam #ab25630); CNX (Cell Signaling #2679S); NES (Millipore #AB5922); CAV-1 (Cell Signaling #3238); and GAPDH (Santa Cruz #sc-32233). Hoechst #33342 from Life Technology was used to counterstain nuclei. For PCR amplification of the spliced and unspliced form of human XBP1, the following primers were used: FW 5′-AGCTCAGACTGCCAGAGATCG-3′; REV 5′-AATCCATGGGGAGATGTTCTA-3′ [35 (link)]. Powders, buffers, and other commonly used reagents were supplied by Sigma unless otherwise noted and were of analytical grade or higher.
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3

Immunoblot and Immunofluorescence Analysis of Autophagy

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For immunoblot analysis, anti-SQSTM1, anti-LC3 and anti-BECN1 were purchased from BD Biosciences and Sigma Aldrich, respectively. For immunofluorescence studies, anti-LC3 was purchased from Cell Signaling and anti-SQSTM1 from Abnova. Anti-TLR2 was from Genetex and anti-MyD88 was from Cell Signaling. Monoclonal anti- β-actin was provided by Abcam and a polyclonal anti- GAPDH was from Ambion Life Technologies. Antibodies directed against gD, ICP0, phospho-p38α and histone H3 were from Santa Cruz Biotechnology; the antibody against ICP8 was kindly provided by Pr. Bernard Roizman. Horseradish peroxidase anti-rabbit and anti-mouse antibodies were from Santa Cruz Biotechnology. Tetramethyl rhodamine isothiocyanate (TRITC)-conjugated goat anti-rabbit antibody was from Jackson and Alexa Fluor 350 donkey anti-mouse antibody was from Invitrogen. Spautin-1 (10 μM), 3-methyladenin (10 mM), filipin (2.5 μg/ml) and sucrose (0.45 M) were from Sigma Aldrich.
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