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2 protocols using myc agarose beads

1

Co-Immunoprecipitation of FOXM1 and CtBP1

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Equal numbers of MG63, MG63-R1, and MG63-R2 cells (approximately 2×107 cells) were lysed in 3 mL RIPA buffer containing protease inhibitor cocktail. After centrifuging at 13,000 rpm for 15 min, 0.2 mL of supernatant was used as input and the other supernatant was subjected to IP assays using Protein-G magnetic beads coupled with anti-FOXM1, anti-CtBP1, or IgG antibodies. The input and purified protein complexes subjected to western blotting to detect FOXM1 and CtBP1 protein levels. For Co-IP assay, MG63 cells were transfected with different combinations of Flag-tagged and MYC-tagged plasmids, as indicated in the figures. Equal amounts of the transfected cells (approximately 2×107 cells) were subjected to IP procedures using Flag-agarose beads (Sigma-Aldrich, #A4596) and MYC-agarose beads (Sigma-Aldrich, #A7470). The input and purified protein complexes were subjected to western blotting using anti-Flag and anti-MYC antibodies.
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2

Immunoblot and Immunoprecipitation Protocols

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CpG DNA were purchased from Sigma-Aldrich. The ON-TARGETplus siRNA were from GE Healthcare. The following antibodies were used for immunoblot analysis and/or immunoprecipitation: anti-IRF7 (sc-74472), anti-IRF7 (sc-9083), anti-NFATC1 (sc-13033), anti-NFATC2 (sc-7296), anti-NFATC3 (sc-8321), anti-NFATC4 (sc-13036), and anti-NFAT5 (sc-13035) were from Santa Cruz Biotechnology, Inc.; anti-IRF7 (51–3300) was from Thermo Fisher Scientific; anti-MyD88 (4283), anti–NF-κB1 p105/p50, and anti-HDAC1 (5356) were from Cell Signaling Technology; and anti-NFATC3 (A303-572A) was from Bethyl Laboratories, Inc. HRP-conjugated anti-HA (ab1265), anti-Myc (ab62928), and anti-transferrin receptor antibody (ab84036) were from Abcam; anti–β-actin, anti-HA antibodies, anti-GST HRP conjugate antibody, HA–agarose beads, and Myc–agarose beads were purchased from Sigma-Aldrich. Glutathione Sepharose 4B beads were from GE Healthcare. Human IFN-α, TNF-α, and IL-6 ELISA kits were from Mabtech. The mouse IFN-α ELISA kit was from eBioscience. The mouse IL-12p40 ELISA kit was from R&D Systems.
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