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Neutravidin pe

Manufactured by Thermo Fisher Scientific

Neutravidin-PE is a biotin-binding protein conjugated to the fluorescent dye phycoerythrin (PE). It has a high affinity for biotin and can be used to detect and locate biotinylated molecules in various applications.

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6 protocols using neutravidin pe

1

Quantifying Rhesus Antibody Levels

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Levels of VRC01 were measured as described in [27 (link)]. Levels of rhesus Rh-α4β7 antibody in macaque plasma were measured using the α4β7-expressing human T cell line HuT-78 (NIH AIDS Reagent Program, Division of AIDS, NIAID, NIH: HuT 78 from Dr. Robert Gallo) in a flow cytometry-based assay as described in [16 (link), 22 (link)] using the standard curve method. Briefly, HuT 78 cells were first incubated for 2–3 days in complete RPMI 1640 media containing 100 nM retinoic acid to increase the surface expression of α4β7. Cells (150,000/condition) were stained with LIVE/DEAD Aqua dye (Thermo Fisher Scientific, Waltham, MA) for live/dead discrimination, incubated for 30min at 4°C with the plasma to be tested (1:10 diluted in PBS) obtained from macaques from the VRC01-α4β7 treatment group before (baseline, BL) and up to 6 weeks after treatment. Cells were then washed and incubated for 30 min at 4°C with anti-rhesus IgG1 (NHP Resource Center, antibody 7H11, in house biotinylated with EZ-link NHS-biotin (Thermo Fisher Scientific) following the manufacturer’s instructions), washed again and resuspended in neutravidin-PE (Thermo Fisher Scientific) for 20 min at 4°C. PE fluorescence was analyzed on a flow cytometer. For the standard curve, baseline plasma was pooled and spiked with serial dilutions of Rh-α4β7 (2,500 μg/ml– 0 μg/ml).
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2

Laminin Binding Assay for Extracellular Vesicles

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Biotinylated recombinant laminin variants Lam521, 511, 421 and 332 and EHS‐laminin111 (Biolamina, Sundbyberg, Sweden) were used in bead‐based laminin‐binding assay. 2 × 1010 EVs were added to 4 × 103 CD9 Exosome Capture Beads (Immunostep) in a total volume of 80 μl 3% BSA‐PBS for 3 h at RT. Beads were collected with centrifugation at 3000 × g for 5 min at RT and washed once with 100 μl PBS. Five μg/ml of biotinylated laminin variants in 3% BSA‐PBS were added to the EV‐bead mixture and incubated for 30 min at RT. After pelleting and a washing step with 3% BSA‐PBS at 4°C, neutravidin‐PE (Thermo Fisher Scientific) (1:800) in 3% BSA‐PBS was added for 30 min on ice to detect EV‐bound laminin in a flow cytometry measurement performed on CytoFLEX S instrument (Beckman Coulter). Median fluorescence values of FSC/SSC gated population were expressed as multiple of readings obtained with wild‐type CD81 EVs after values obtained with the secondary reagent alone were subtracted.
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3

Quantifying EV-Laminin Interactions

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Five times 109 recombinant EVs harbouring wild‐type CD81‐eGFP or its laminin‐targeting variant L2ALU_1 were incubated with 6 × 103 CD9 Exosome Capture Beads (Immunostep) in 120 μl 3% BSA‐PBS for 3 h at RT. Beads were collected with centrifugation at 3000 × g for 5 min at RT and washed once with 100 μl PBS. Five μg/ml of biotinylated human placental laminin in 3% BSA‐PBS, and additionally 15 μg/ml of unlabelled laminin for competition in parallel samples were added to the EV‐bead mixture and incubated for 30 min at RT. After pelleting and a washing step with 3% BSA‐PBS at 4°C, neutravidin‐PE (Thermo Fisher Scientific) (1:800) in 3% BSA‐PBS was added for 30 min on ice to detect EV‐bound laminin in a flow cytometry measurement performed on CytoFLEX S instrument (Beckman Coulter).
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4

Biotinylated HIV-1 gp120 Staining of CD4+ T Cells

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The gp120s derived from HIV-1 AD8, AC02, CAP88, CM224, MW959, SF162, Bal, and SIVmac251 were biotinylated (Lynx biotinylation kit, Bio-Rad) and used to stain primary CD4+ T cells, isolated from healthy donors, followed by neutravidin PE (Invitrogen) in the absence or presence of the CD4 mAb Leu3a (positive control) or HmAb64, washed 2x and data was collected on a FACSCanto using standard protocols.
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5

CD4+ T Cell Binding Assay

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The gp120s derived from HIV-1 MW959, SF162, Bal and SIVmac251 were biotinylated (Lynx biotinylation kit, Biorad) and used to stain primary CD4+ T cells, isolated from healthy donors, followed by neutravidin PE (Invitrogen) in the absence or presence of the CD4 mAb Leu3A (positive control) or HmAb64, washed 2x and data was collected on a FACS CANTO using standard protocols.
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6

Quantification of α4β7+ Cell Binding

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α4β7+ cells were plated at 200,000 cells per well on a 96-well plate and washed twice with binding buffer (10 mM HEPES, 150 mM NaCl, 1 mM MnCl2, 0.1 mM CaCl2, 0.5% BSA, 0.09% NaN3). V2 peptides or clade A gp120 (isolated from an infected patient in Uganda, submission to GenBank in process; kindly gifted by Dr. J. Arthos), clade A/E gp120 (CM244, RV254.006), clade C gp145 (CO6980v0.c22; kindly gifted by Dr. V. Polonis) were used at 2–5 µg final concentrations – after biotinylation according to manufacturer’s protocol (Thermo Scientific). Peptides or proteins were added to the cells, incubated for 30 minutes on ice, washed twice with binding buffer, then stained with β7 PE-Cy5 (BD Bioscience). The cells were then incubated with NeutrAvidin PE (Invitrogen) for 20 minutes at 4°C, washed twice with binding buffer, and fixed with 2% PFA/PBS. In some experiments, 4 mM EDTA was added prior to the peptide. The binding was determined using a LSR II flow cytometer (Becton Dickinson) and FlowJo 9.2 software as above.
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