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30 protocols using thapsigargin

1

Transcriptional Analysis of Pancreatic Islet Stress

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Pancreatic islets were isolated from NOD.scid mice as described above. Whole islets were then cultured in RPMI supplemented with 10% Fetal Bovine Serum (FBS) for 7 h. Additional stimulation conditions included recombinant mouse Areg (100 ng/mL) (Recombinant mouse Amphiregulin, Carrier-free, Biolegend), Thapsigargin (5 uM) (Enzo Life Sciences), or mAreg plus Thapsigargin. After 7 h, total RNA was extracted following the manufacturer’s protocol from Qiagen RNeasy kit. First strand cDNA synthesis was performed using the manufacturer’s protocol from High-Capacity Reverse Transcriptase kit (Applied Biosciences). The following targets were analyzed by qPCR (Insulin, Grp78, sXBP1, CHOP, ATF4, ATF6, GAPDH) using a QuantStudio6 (Applied Biosystems). Primers for each target are listed in Table 1.

Primer sequences of targets used in qPCR.

TargetSequence
InsulinForwardGTCAAGCAGCACCTTTGTGGTTCC
ReverseACAATGCCACGCTTCTGCTG
Grp78ForwardTGCTGCTAGGCCTGCTCCGA
ReverseCGACCACCGTGCCCACATCC
sXbp1ForwardGAGTCCGCAGCAGGTGC
ReverseCAAAAGGATATCAGACTCAGAATCTGAA
Atf4ForwardGCCGGTTTAAGTTGTGTGCT
ReverseCTGGATTCGAGGAATGTGCT
Atf6ForwardGATGCAGCACATGAGGCTTA
ReverseCAGGAACGTGCTGAGTTGAA
ChopForwardCGGAACCTGAGGAGAGAGTG
ReverseCGTTTCCTGGGGATGAGATA
GapdhForwardTGCACCACCAACTGCTTAG
ReverseGGATGCAGGGATGATGTTC
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2

Pancreatic Islet RNA Expression Analysis

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Pancreatic islets were isolated from NOD.scid mice as described above. Whole islets were then cultured in RPMI supplemented with 10% Fetal Bovine Serum (FBS) for 7 hrs. Additional stimulation conditions included recombinant mouse Areg (100ng/mL) (Recombinant mouse Amphiregulin, Carrier-free, Biolegend), Thapsigargin (5uM) (Enzo Life Sciences), or mAreg plus Thapsigargin. After 7 hrs, total RNA was extracted following the manufacturer’s protocol from Qiagen RNeasy kit. First strand cDNA synthesis was performed using the manufacturer’s protocol from High-Capacity Reverse Transcriptase kit (Applied Biosciences). The following targets were analyzed by qPCR (Insulin, Grp78, sXBP1, CHOP, ATF4, ATF6, GAPDH) using a QuantStudio6 (Applied Biosystems). Primers for each target are listed in Table 1.
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3

Reagent Procurement for Cell Studies

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Thapsigargin and Tunicamycin were purchased from Enzo Life Sciences AG (Lausen, Switzerland). DMSO was obtained from Carl Roth GmbH + Co. KG (Karlsruhe, Germany). Q-VD-Oph (QVD) was purchased from Selleckchem (Houston, TX, USA). IZI1551 (TRAIL) was produced as described before [29 ]. Cycloheximide (CHX) was obtained from Sigma-Aldrich (St. Louis, Missouri, USA) and Necrostatin-1 was from APExBIO (MA, USA).
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4

Calcium Release from Endoplasmic Reticulum

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Release of Ca2+ from ER, upon treatment with C36L1 was determined using the kit for detection of cytosolic calcium levels Fluo 4NW (Invitrogen). B16F10-Nex2 (2 × 104) cells were seeded in 96-well plates and pre-incubated with or without 2 μM of Thapsigargin (Enzo Life Science) for 1 h. The supernatant was then removed and 100 μL of Ca2+ staining solution was added (according to manufacturer's specifications) for 45 min at 37 °C. After incubation with the calcium probe, cells were treated with the peptide C36L1 at 5 nmole/103 cells and fluorescence readings were obtained at 494 nm excitation and 516 nm emission every 60 seconds, for 6 h, in a plate spectrophotometer (Spectra Max m2e, Molecular Devices).
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5

Measuring Calcium Influx in NHEKs

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[Ca2+]i was measured by a Fluo-4 NW Calcium Assay Kit (Life Technologies). Because the calcium ion concentration of the NHEK culture medium is low, we used low calcium contained-balanced salt solution (10 mM HEPES, pH7.4, 120 mM NaCl, 4 mM KCl, 1 mM KH2PO4, 1 mM MgCl2, 5 mM glucose, and 0.05 mM CaCl2) (Karvonen et al., 2000 (link)) instead of the Kit-included Assay buffer. To study calcium ion influx, cells were incubated with dye loading solution (balanced salt solution with Fluo-4 NW dye mix and 2.5 mM probenecid) at 37°C for 30 minutes, and then at room temperature for an additional 30 minutes. TIP39 peptide (5–25 μM), ionomycin (1 μM), thapsigargin (1 μM) (Enzo Life Science), bafilomycin A (0.5 μM) (Sigma-Aldrich), xestospongin C (5 μM), U73122 (5 μM), and W-7 (50 μM) (TOCRIS Bioscience, Bristol, UK) were added as indicated in dye loading solution, and then [Ca2+]i was monitored at an emission of 516 nm with excitation of 494 nm using a SpectraMax Gemini EM microplate Reader (Molecular Devices, Sunnyvale, CA) (Jiang et al., 2011 (link)). Fluo-4 signal changes (%) were defined as (F − F0)/F0 × 100. F was the target fluorescence signal intensity and F0 was the baseline calculated by averaging five time points just before the application of the stimulus.
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6

Plasmid Generation and Reagent Use

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Details of all yeast and human cell line plasmids are listed in Supplementary Data 1. All plasmids generated in this study were constructed using the Gibson assembly cloning kit (NEB), in accordance with manufacturer guidelines. About 30 bp overlaps were utilized for DNA fragment joining; Sanger sequencing confirmed successful cloning. Chemicals used in this paper: FM4-64 (Thermo Fisher Scientific, T3166), Lucifer yellow (Thermo Fisher Scientific, L453), Thapsigargin (Enzo Life Sciences, BML-PE180-0001), Dynasore (Sigma Aldrich, D7693), MG132 (VWR, 89161-566), CHX (Amresco, 94271-5G), Rapamycin (Fisher Scientific, BP2963-1). ATG5 siRNA was purchased from CST. Short hairpin RNAs were bought from Sigma Aldrich.
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7

Compound Sourcing for Cell Study

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We obtained the compounds for this study from the following sources: DAPT (N-[N-(3,5-difluorophenacetyl)-1-alanyl]-(S)-phenylglycine) (Selleckchem, Houston, TX USA, #S2215), thapsigargin (Enzo Biochem, Inc., USA #BML-PE180–0005).
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8

Immunoblotting Protocol for Phosphotyrosine

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Monoclonal mouse anti-phosphotyrosine antibodies (clone 4G10), peroxidase-conjugated goat anti-mouse antibodies, and peroxidase-conjugated goat anti-rabbit antibodies were purchased from Millipore Corporate (Billerica, MA). Affinity-purified rabbit anti-ACRBP antibodies were a kind gift from Baba et al. and were prepared as described previously [26 (link)]. Tris (hydroxymethyl) aminoethane (Tris) was obtained from Bio-Rad (Mississauga, ON). Thapsigargin was obtained from Enzo Life Sciences (Ontario, Canada). Fluorescein isothiocyanate conjugated goat anti-rabbit antibody was sourced from Biosource International (Camarillo, Calif). Affinity purified polyclonal anti-SERCA 2 (N-19) goat antibody was obtained from Santa Cruz Biotechnology Inc. (Santa Cruz, CA). The secondary antibodies raised against goat and immunoglobulin G (IgGs) conjugated to fluorescein isothiocyanate were from Jackson ImmunoResearch Laboratories Inc. (West Grove, PA). Unless otherwise stated, all chemicals used in the present study were obtained from Sigma Chemical Company (St. Louis, MO).
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9

Modulation of Cellular Stress Responses

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Thapsigargin was obtained from Enzo Life Sciences. The TLR4 agonist KLA (Kdo2-Lipid A) was from Santa Cruz Biotechnology. Sodium arsenite, the oxindole-imidazole-C16, salubrinal, the three flavonoids luteolin, myricetin and quercetin were from Sigma. The PERK inhibitor GSK2606414 (Perki) was from Calbiochem. The PKR and PERK inhibitors, the flavonoids and salubrinal were all kept in DMSO as stock solution then diluted in cell culture medium immediately before use. The CHAPS detergent (3-((3-cholamidopropyl) dimethylammonio)-1-propanesulfonate was from Sigma. Control siRNA (ON-TARGETplus Non-targeting Pool #D-001810-10-0X) and siRNA against PKR (ON-TARGETplus EIF2AK2 siRNA LQ-003527-00-0002) were from Dharmacon Research, Inc. (Lafayette, CO). siRNA against PACT (PRKRA, ID:s16335, Ambion; Life Technologies) was a kind gift of A. Komarova (Institut Pasteur).
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10

Intracellular Calcium Measurement in NHEK

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Intracellular calcium measurement was performed as previously described (Sato et al., 2016). NHEK were seeded at 4×104/well (or 1×104/well for siRNA experiment) one day before experiments. For testing calcium reaction in the endoplasmic reticulum, we used calcium free balanced salt solution with 150μM EGTA. 10 or 25μM TIP39 peptide (Bachem), 5μM thapsigargin, 5 or 10μM ionomycin (Enzo Life Science) and 2 or 2.5 mM CaCl2 were added as indicated in dye loading solution then Intracellular calcium was monitored at an emission of 516 nm with excitation of 494 nm using SpectraMax Gemini EM microplate Reader (Molecular Devices, Sunnyvale, CA). Fluo-4 signal changes (%) were defined as (F-F0) / F0 × 100. F was the target fluorescence signal intensity and F0 was the baseline calculated by averaging five time points just prior to the application of the stimulus. Intracellular calcium images were captured using a BX41 microscope (Olympus).
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