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Microplate spectrophotometer

Manufactured by Agilent Technologies
Sourced in United States, United Kingdom, China

The Microplate Spectrophotometer is a versatile instrument designed for a wide range of absorbance-based applications in life sciences and analytical laboratories. It is capable of measuring the optical density or absorbance of samples in microplates, enabling efficient and accurate quantification of biomolecules, enzymatic activities, and other analytes.

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506 protocols using microplate spectrophotometer

1

Phenolic Compounds and Antioxidant Capacity Assay

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Total phenolic compounds were analysed using Folin–Ciocalteu’s colorimetric assay as described by Singleton and Rossi (1965) [63 ]. For the colorimetric assay a microplate spectrophotometer (BioTek Instruments, Winooski, VT, USA) was used. Gallic acid (Riedel-de Haën, Hannover, Germany) was used as the standard, and the total phenolic content in the samples was expressed as mg of gallic acid equivalents (GAE)/100 g d.w.
The antioxidant capacity of the EPP extracts was analysed by two different methods: the ferric reducing antioxidant power (FRAP) and the oxygen radical absorbance capacity (ORAC), following the procedures described by Benzie and Strain (1996) [64 (link)] and Ou et al. (2001) [65 (link)], respectively. The methods were adapted to a microplate spectrophotometer (BioTek Instruments, Winooski, VT, USA) and the results were expressed as µmol of TE/g d.w.
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2

Cytotoxicity Assay of Cell Cultures

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The cells (1×104/well) were seeded in 96-well plates and transfected with Lipofectamine® 2000 (Invitrogen; Thermo Fisher Scientific, Inc.). MTT (20 µl) was added into each well and incubated for 4 h at 37°C. A total of 150 µl isopropanol was added and the cells were incubated at room temperature in the dark for 20 min. The absorbance was measured using a microplate spectrophotometer (Bio-Tek Instruments, Inc., Winooski, VT, USA) at 492 nm.
LDH activity was measured using LDH activity kits (C0016; Beyotime Institute of Biotechnology, Haimen, China) and the absorbance was measured using a microplate spectrophotometer (Bio-Tek Instruments, Inc.) at 450 nm.
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3

Probing AR-Dependent Transcriptional Activity

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To determine AR-dependent transcriptional activity, HEK293T cells were
transiently transfected in culture media containing 10% charcoal-dextran
stripped serum with ARE-firefly luciferase and CMV-Renilla luciferase (Cignal
ARE Reporter Assay Kit, Qiagen), in addition to either FLAG-AR24Q or FLAG-AR65Q
(gift from Maria Pennuto). Following 24 h of transfection, cells were washed and
treated with vehicle, bicalutamide, TA, or MEPB for 24 h. Firefly and Renilla
luciferase substrates (Dual-Luciferase Reporter Assay, Promega) were added, and
luciferase activity was measured using a microplate spectrophotometer (BioTek).
Mammalian two-hybrid assays were performed by transiently transfecting HEK293T
cells with pG5Luc firefly luciferase reporter (Checkmate Mammalian Two-Hybrid
kit, Promega), CMV-Renilla luciferase (Cignal ARE Reporter Assay Kit, Qiagen),
and GAL4 DBD-AR LBD (gift from Elizabeth Wilson), in addition to either VP16
empty vector, VP16-NCoR, or VP16-SMRT (gifts from Vivian Bardwell) for 24 h.
Cells were then washed and treated with vehicle, TA, or MEPB for 24 h. Renilla
and firefly luciferase were quantified using Dual-Luciferase Reporter Assay
(Promega) and a microplate spectrophotometer (BioTek).
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4

Probing AR-Dependent Transcriptional Activity

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To determine AR-dependent transcriptional activity, HEK293T cells were
transiently transfected in culture media containing 10% charcoal-dextran
stripped serum with ARE-firefly luciferase and CMV-Renilla luciferase (Cignal
ARE Reporter Assay Kit, Qiagen), in addition to either FLAG-AR24Q or FLAG-AR65Q
(gift from Maria Pennuto). Following 24 h of transfection, cells were washed and
treated with vehicle, bicalutamide, TA, or MEPB for 24 h. Firefly and Renilla
luciferase substrates (Dual-Luciferase Reporter Assay, Promega) were added, and
luciferase activity was measured using a microplate spectrophotometer (BioTek).
Mammalian two-hybrid assays were performed by transiently transfecting HEK293T
cells with pG5Luc firefly luciferase reporter (Checkmate Mammalian Two-Hybrid
kit, Promega), CMV-Renilla luciferase (Cignal ARE Reporter Assay Kit, Qiagen),
and GAL4 DBD-AR LBD (gift from Elizabeth Wilson), in addition to either VP16
empty vector, VP16-NCoR, or VP16-SMRT (gifts from Vivian Bardwell) for 24 h.
Cells were then washed and treated with vehicle, TA, or MEPB for 24 h. Renilla
and firefly luciferase were quantified using Dual-Luciferase Reporter Assay
(Promega) and a microplate spectrophotometer (BioTek).
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5

Analyzing Phenolic Content and Antioxidant Activity

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Each 0.2 g sample was flash-frozen in liquid nitrogen, pulverized, combined with 10 mL of 80% (v/v) methanol, vortexed for 15 s, sonicated for 20 min, and centrifuged at 3000× g and 22 °C for 20 min. Each supernatant was transferred to a new 15 mL tube, diluted with an equal volume of 80% (v/v) methanol, and used in the subsequent assays.
Total phenolic content was determined with Folin–Ciocalteu reagent [52 ]. Fifty microliters diluted solution and 50 μL Folin–Ciocalteu reagent were added to 450 μL distilled water. The mixture was vortexed briefly and incubated at 22 °C for 5 min. Then, 150 μL of 20% (w/v) Na2CO3 and 200 μL distilled water were added, and the mixture was incubated in the dark at 22 °C for 30 min. Absorbance was measured at 750 nm using a microplate spectrophotometer (BioTek Epoch, Winooski, VT, USA). A standard curve was plotted using various gallic acid dilutions.
Total antioxidant activity was determined by evaluating the ABTS•+ scavenging activity [53 (link)]. The ABTS•+ solution was diluted with distilled water to OD734 = 0.7. Then, 1.2 mL diluted ABTS•+ solution was mixed with 10 μL sample. The mixture was vortexed briefly and incubated in the dark at 22 °C for 15 min. Absorbance was measured at 734 nm using a microplate spectrophotometer (BioTek Epoch, Winooski, VT, USA). A standard curve was constructed using various Trolox dilutions.
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6

Tyrosinase Activity Assay in SK-MEL-2 Cells

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The cellular tyrosinase activity was conducted as previously described (Lv et al., 2020 (link)). SK-MEL-2 cells were incubated with different concentrations of FGIN-1-27 (0, 1, 2, 4 μM) or OAG (200 μM) for 12 h or 48 h and then lysed with cell lysis buffer. Cell lysates were centrifuged at 13,000 rpm for 10 min at 4°C to obtain the supernatant for tyrosinase activity assay. Protein concentrations were determined by BCA kit with bovine serum albumin (BSA) as a standard.100 μL PBS (0.1 M, pH 6.5) containing 30 μg proteins mixed with 100 μL L-DOPA (0.1%) and then incubated at 37°C for 1 h. Optical absorbance was measured at 475 nm using a microplate spectrophotometer (BioTek Instruments).
The direct effect of FGIN-1-27 on tyrosinase activity was conducted in accordance with a previous method (Tomita et al., 2010 (link); Lv et al., 2020 (link)). 100 μL PBS (0.1 M, pH 6.5) containing different concentrations of FGIN-1-27 mixed with mushroom tyrosinase (10 unit) and 50 μL L-tyrosine (0.05%) and then incubated at 37°C for 10 min. Optical absorbance was measured at 475 nm using a microplate spectrophotometer (BioTek Instruments).
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7

Cytotoxicity Assay of Oncolytic Viruses

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Cells were dissociated with Accutase and plated at 104 cells/well in 96 well plates. After overnight culture, graded doses from 0 to 3.3 plaque-forming units (PFU) per cell of G207 or M002 were added to each row and cytotoxicity was measured 72 hours post-infection with alamarBlue® (Life Technologies, Grand Island, NY) as previously described23 (link),25 (link),50 (link). Graded doses of the virus were internally compared to mock-treated controls, which were included with each experiment and represented 100% tumor cell survival. Color changes of alamarBlue® were quantified with a BioTek microplate spectrophotometer (Winooski, VT), and OD595-562 nm values were used to calculate the IC50. (N ≥ 4).
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8

Validating VC Cellular Model with Pi

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For the validation of the VC cellular model, primary RVSMCs were seeded in a 12-well plate. When cells reached about 80% confluence, 2 mM Pi was treated for 6 h, 3 days, and 6 days, respectively. For the confirmation of the effects of circSamd4a knockdown or its overexpression, A10 cells were seeded in a 24-well plate. After a day, cells were treated with either siRNA or overexpression vector. Then, 4 mM Pi was treated for an additional 3 days. For the ARS staining, cells were washed with PBS and fixed with 10% formalin at room temperature for 1 h. After removing 10% formalin, cells were washed three times with distilled water. When the samples were exposed to air and dried, 40 mM ARS solution (pH 4.2) (Sigma) was treated, and the samples were incubated overnight with rotation at room temperature. After removing the ARS solution, samples were washed with distilled water and PBS.
For ARS staining quantification, 300 μL 10% cetylpyridinium chloride (Sigma) was added to samples and incubated for 30 min. Then 200 μL dissolved solution was used to measure their absorbance at 562 nm by utilizing a microplate spectrophotometer (BioTek Instruments).
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9

Steady-State ATPase Assay for Myosin

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Steady-state ATPase measurements were carried out in 50 μl volume in a flat bottom 384-well plate (Nunc-Thermo Fischer) using NADH-PK/LDH coupled assay described previously (Gyimesi et al., 2008 (link)). Briefly, myosin samples were mixed with 2% pyruvate kinase/lactate dehydrogenase (PK/LDH) mixture (Sigma P0294), 1 mM phosphoenol-pyruvate (PEP) and 200 μM NADH at 25°C in the presence of 0.5 mM ATP and 25 μM F-actin in ATPase buffer (10 mM MOPS pH 7.0, 4 mM MgCl2, 2 mM β-mercaptoethanol) for 15 minutes. Absorbance was followed at 340 nm wavelength to follow the decrease of NADH in Microplate Spectrophotometer (BioTek Epoch). ATPase activity was calculated from linear regression of the time dependent absorbance data collected at 340 nm. Different concentrations of inhibitors were added to the reaction in 0.5 μl DMSO (1% of total volume). DMSO and actin-controls were measured for each measurement set.
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10

Quantifying Lactate Production in Biofilms

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The specimens with the treated biofilms (5 per group) were transferred to Falcon tubes containing 5 mL of PBS and incubated at 37 °C for 3 h. Then, 1 mL of each tube was placed in a freezer at −80 °C for 5 min to stop the acid production. To verify the concentrations of lactate, the enzymatic method of lactic dehydrogenase was used according to the manufacturer’s instructions (Lactic dehydrogenase LDH UV K014, Bioclin, Belo Horizonte, Brazil). Absorbance was measured at 340 nm using a microplate spectrophotometer (Epoch, Biotek, Winooski, VT, USA), and the obtained values were expressed as mmol lactate/L.
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